Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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101 to 110 of 269 Results
Secondary outcome_Infection Prevalence_Analysis.R
Aug 29, 2025 - Protocol, Replication Data and Codes for: Non-pyrethroid indoor residual spraying or intensive behavior change communication in combination with long-lasting insecticidal nets against malaria disease in West Africa: a pragmatic transnational cluster-randomized controlled trial.
R Syntax - 6.9 KB - MD5: 7445d0c3ba31125939bb79928c113bf6
Code
Analysis code: see README.md
Secondary outcome_LLIN use_Analysis.R
Aug 29, 2025 - Protocol, Replication Data and Codes for: Non-pyrethroid indoor residual spraying or intensive behavior change communication in combination with long-lasting insecticidal nets against malaria disease in West Africa: a pragmatic transnational cluster-randomized controlled trial.
R Syntax - 5.0 KB - MD5: a6f9b1f2c854bda762495c4ba6853177
Code
Analysis code: see README.md
Secondary outcome_Mosquito HBR_Analysis.R
Aug 29, 2025 - Protocol, Replication Data and Codes for: Non-pyrethroid indoor residual spraying or intensive behavior change communication in combination with long-lasting insecticidal nets against malaria disease in West Africa: a pragmatic transnational cluster-randomized controlled trial.
R Syntax - 3.0 KB - MD5: 85cf3e5d0c4114b286c582f920558b64
Code
Analysis code: see README.md
Secondary outcome_Parasite density_Analysis.R
Aug 29, 2025 - Protocol, Replication Data and Codes for: Non-pyrethroid indoor residual spraying or intensive behavior change communication in combination with long-lasting insecticidal nets against malaria disease in West Africa: a pragmatic transnational cluster-randomized controlled trial.
R Syntax - 2.7 KB - MD5: ec74f190c475112208c273e32d2cbfb8
Code
Analysis code: see README.md
Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Nov 15, 2024 - Porpoises genetics and genomics
Ben Chehida, Yacine; Thumloup, Julie; Schumacher, Cassie; Harkins, Timothy; Aguilar, Alex; Borrell, Asunción; Ferreira, Marisa; Rojas-Bracho, Lorenzo; Robertson, Kelly M.; Taylor, Barbara L.; Víkingsson, Gísli A.; Weyna, Arthur; Romiguier, Jonathan; Morin, Philip A.; Fontaine, M. C., 2020, "Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum", https://doi.org/10.23708/QBIUMI, DataSuds, V2
These data and scripts are accompanying the manuscript "Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum" by Ben Chehida Y., Thumloup J., Schumacher C., Harkins T., Aguilar A., Borrell A., Ferreira M., Rojas-Br...
Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Nov 15, 2024 - Porpoises genetics and genomics
Louis, M.; Galimberti, M.; Archer, F.; Berrow, S.; Brownlow, A.; Fallon, R.; Nykänen, M.; O’brien, J.; Roberston, K. M.; Rosel, P. E.; Simon-Bouhet, B.; Wegmann, D.; Fontaine, M. C.; Foote, A. D.; Gaggiotti, O. E., 2021, "Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins", https://doi.org/10.23708/Q2MYHE, DataSuds, V2
Data from Louis M., Galimberti M, Archer F., Berrow S., Brownlow A., Fallon R., O'Brien J., Robertson K., Rosel P. E., Simon-Bouhet B., Wegmann D., Fontaine M. C. *, Foote A. D.*, Gaggiotti O. E.*. 2021. Selection on ancestral genetic variation fuels repeated ecotype formation in...
Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Aug 5, 2024
Amaya Romero, Jorge E.; Chenal, Clothilde; Ben Chehida, Yacine; Miles, Alistair; Clarkson, Chris; Pedergnana, Vincent; Wertheim, Bregje; Fontaine, Michael C., 2024, "Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides", https://doi.org/10.23708/WIAJDN, DataSuds, V1
Supporting data and scripts related to the study: Romero, J. E. A., Chenal, C., Chehida, Y. B., Miles, A., Clarkson, C. S., Pedergnana, V., Wertheim, B., & Fontaine, M. C. (2024). Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito...
0_ReadMe.txt
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Plain Text - 3.3 KB - MD5: cbf0f3a53523ca1f2f0ebd1027295d65
ReadMe file - data citation, description and terms of use.
Romero_et_al_GBE2024_AMOVA.tar.gz
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Gzip Archive - 912.2 KB - MD5: 2cc81cffaff0960a37cd965b2f5bfc5d
CodeDataDocumentation
Input files, R-scripts, and raw results required to reproduce the Analysis of Molecular Variance (AMOVA) on the Ag1000G data. The tar archive includes: (1) the multi-fasta DNA sequence input files (.fasta) with the sequence name including the sample-ID + pop_id + [ groups ID ] ;...
Romero_et_al_GBE2024_final_alignment_new_header_no_loop_no_insertions_only_coding_1222seq.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 17.3 MB - MD5: 4874423647b8174bbbf249bf04a5968b
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for all the samples considered (n=1222). These include the 1142 samples from the Anopheles gambiae 1000 genome project (2020), those of the Anopheles gambiae complex from Fontaine et al. 201...
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