UMR MIVEGEC

Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.

L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.

Porpoises genetics and genomics

REACT Project

REACT2 Project

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111 to 120 of 203 Results

Louis_et_al2023_5.selection.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 7.8 MB - MD5: 19899db3c096b4cc9e222b9477f727ea CodeData Scripts and input files to run and plot heterozygosity (subfolder 5.1.heterozygosity), and genotype plots, NJ tree (including bootstrapping) and PCA (subfolder P5.2.CA_NJtree_genotype_plot) for the SNPs under parallel linked selection. There is aslo a subfolder within 5.2. to gen...
Louis_et_al2023_6.mitogenomes.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 299.5 KB - MD5: a870965b07accdc346cfbb09c65b1a7d CodeData Scripts and input files to generate the mitogenone analyses (Figure S1). R script and files to plot the samples (Figure 1a). To uncompress, type "tar xzvf 6.mitogenomes.tar.gz"
Louis_et_al2023_code_data_analyses.txt Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Plain Text - 45.4 KB - MD5: 7bb222a264abcc01418451e30dfaf646 CodeDocumentation Scripts, tools, and data to reproduce all the analyses in the manuscript
Louis_et_al2023_code_mapping_filtering_ancientDNA.txt Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Plain Text - 42.3 KB - MD5: 9a5937cb6042ca80fad874efed927c35 CodeDocumentation Pipeline (in shell) to map and filter the ancient DNA data
Louis_et_al2023_code_mapping_filtering_contemporaryDNA.txt Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Plain Text - 29.3 KB - MD5: 55ba283fcdd3d70e06bbfcd0c109b3e4 CodeDocumentation Pipeline (in shell) to map and filter the contemporary DNA data, including the three new samples, and the outgroups (killer whale and Indo-Pacific bottlenose dolphin)
Louis_et_al2023_map.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 299.5 KB - MD5: 92824da49b11ec507505443c62440966 CodeData R script and files to plot the samples (Figure 1a). To uncompress, type "tar xzvf map.tar.gz"
Louis_et_al2023_Readme.txt Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Plain Text - 3.2 KB - MD5: 7d092982e6c3423f1f2d6efdfa6941a3 Documentation README file detailing the content of each file and folder
Taconet_2023_supplementary_file_4.tab Jun 8, 2023 - Supplementary information for: Physiological and behavioural resistance of malaria vectors in rural West-Africa: a data mining study to adress their fine-scale spatiotemporal heterogeneity, drivers, and predictability Tabular Data - 14.4 KB - 7 Variables, 114 Observations - UNF:6:/NwlGlNxXljdkOBTx0CO6Q== Data Results of the GLMM (coefficients / odd ratios, confidence intervals, p-values)
001_LULC_ToriBossito.tif Jun 1, 2023 - Land use land cover high resolution map (10 m) for the area of Tori-Bossito, Benin, 2010-2011 TIFF Image - 21.5 MB - MD5: a4c6073e2ecc8d0759e2fc80fd5933cf Data The LULC georeferenced raster data
002_Miniature.png Jun 1, 2023 - Land use land cover high resolution map (10 m) for the area of Tori-Bossito, Benin, 2010-2011 PNG Image - 344.0 KB - MD5: f43348925f1af58bd30cca6839fdec84 Visualization Map as a .png image (for visualization purposes only)

Louis_et_al2023_5.selection.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 7.8 MB -

CodeData

Scripts and input files to run and plot heterozygosity (subfolder 5.1.heterozygosity), and genotype plots, NJ tree (including bootstrapping) and PCA (subfolder P5.2.CA_NJtree_genotype_plot) for the SNPs under parallel linked selection. There is aslo a subfolder within 5.2. to gen...

Louis_et_al2023_6.mitogenomes.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 299.5 KB -

CodeData

Scripts and input files to generate the mitogenone analyses (Figure S1). R script and files to plot the samples (Figure 1a). To uncompress, type "tar xzvf 6.mitogenomes.tar.gz"

Louis_et_al2023_code_data_analyses.txt

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Plain Text - 45.4 KB -

CodeDocumentation

Scripts, tools, and data to reproduce all the analyses in the manuscript

Louis_et_al2023_code_mapping_filtering_ancientDNA.txt

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Plain Text - 42.3 KB -

CodeDocumentation

Pipeline (in shell) to map and filter the ancient DNA data

Louis_et_al2023_code_mapping_filtering_contemporaryDNA.txt

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Plain Text - 29.3 KB -

CodeDocumentation

Pipeline (in shell) to map and filter the contemporary DNA data, including the three new samples, and the outgroups (killer whale and Indo-Pacific bottlenose dolphin)

Louis_et_al2023_map.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 299.5 KB -

CodeData

R script and files to plot the samples (Figure 1a). To uncompress, type "tar xzvf map.tar.gz"

Louis_et_al2023_Readme.txt

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Plain Text - 3.2 KB -

Documentation

README file detailing the content of each file and folder

Taconet_2023_supplementary_file_4.tab

Jun 8, 2023 - Supplementary information for: Physiological and behavioural resistance of malaria vectors in rural West-Africa: a data mining study to adress their fine-scale spatiotemporal heterogeneity, drivers, and predictability