Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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121 to 130 of 149 Results
Guissou_et_al2023_data_dictionary.tab
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
Tabular Data - 1.1 KB - 4 Variables, 11 Observations - UNF:6:JN7Vu/FvwtipzLIIQRkhlQ==
Documentation
Data dictionary
Guissou_et_al2023_dataset_readme.txt
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
Plain Text - 2.2 KB - MD5: 84e0ba2eb72448c704f91023fa29a912
Documentation
Dataset citation and description
Guissou_et_al2023_Script_R.R
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
R Syntax - 8.5 KB - MD5: d4db1749015684a22622bd8f5cfcd4dc
CodeDocumentation
Script R used for statistical analysis, including variable descriptions and the meaning of variable codes.
longevity.txt
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
Plain Text - 6.6 KB - MD5: bcdce0c83ab791bd3dca2e50047c0a46
Data
Data used to estimate the effect of parasite density on mosquito survival
oocyst.txt
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
Plain Text - 2.7 KB - MD5: 569a671ec0bd9a022936401d3249328c
Data
Data used to estimate the infection prevalence and intensity in mosquito gut at 7 days post blood meal (dpbm)
sporozoite.txt
Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code
Plain Text - 5.9 KB - MD5: c108756a0879129ada5a8bbf5dcfc47f
Data
Data used to estimate the infection prevalence and intensity in mosquito head/thoraces upon death
1_TtmappednewTtvar_biallelic.vcf.gz
Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Gzip Archive - 704.4 MB - MD5: 4461877afe51bc505f570808593aa7c0
Data
Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.
2_Tursiops_unlinkedSNPs.beagle.gz
Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Gzip Archive - 85.1 MB - MD5: 8fe3f103955bdd7dd145c316dc008fe6
Data
Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...
3_Tursiops_ALL.haplo.gz
Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Gzip Archive - 108.0 MB - MD5: e7909efb3649e2ac35f3cb17268be917
Data
haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...
4_GhostAncestry-master.tar.gz
Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Gzip Archive - 8.8 KB - MD5: d5234dbb967ad08679ed0eb346e3308e
Code
GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...
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