UMR MIVEGEC

Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.

L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.

Porpoises genetics and genomics

REACT Project

REACT2 Project

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141 to 146 of 146 Results

random_number.py Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Python Source Code - 1.2 KB - MD5: acfd75a55d7296be44e476b842408231 Code Python script used to select randomly sequences from a fasta file. This script is used to conduct the rarefaction analysis. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9).
skyline_beast.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 872 B - MD5: 55a14528fb89152ed013e14964f94266 Code Bash script used to run BEAST software and reconstruct the skyline plots. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
skyline_file.xml Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum XML - 198.1 KB - MD5: 820c82a0bb4b3688607eaa051a8a6375 Data Input file used in skyline_beast.sh to run the skyline plot analysis in BEAST software which estimates the variation of the effective population size through time. This file was created with BEAUti program of BEAST See details in Ben Chehida et al. (2020, Scientific Reports, DOI:...
Trimmomatics.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 1.3 KB - MD5: a2cc3c42e514b85eb265f66c33f2a88c Code Bash script used to clean the raw read (fastq format) with trimmomatic. Additional information is provided in Text S1 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
entomo_gites_larvaires_ci_l0_columns_labels.tab Mar 10, 2020 - Identification et caractérisation des gîtes larvaires d'Anopheles spp. dans la région de Korhogo, nord Côte d'Ivoire, 2016-2017 Tabular Data - 2.2 KB - 5 Variables, 49 Observations - UNF:6:LnVV3AfYCGr7lVjLojotCQ== Data dictionaryDocumentation
entomo_gites_larvaires_ci_l0_data.tab Mar 10, 2020 - Identification et caractérisation des gîtes larvaires d'Anopheles spp. dans la région de Korhogo, nord Côte d'Ivoire, 2016-2017 Tabular Data - 289.9 KB - 50 Variables, 808 Observations - UNF:6:oRQQ4QEbG8GByStaRBDAkQ== Data

random_number.py

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Python Source Code - 1.2 KB -

Code

Python script used to select randomly sequences from a fasta file. This script is used to conduct the rarefaction analysis. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9).

skyline_beast.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 872 B -

Code

Bash script used to run BEAST software and reconstruct the skyline plots. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

skyline_file.xml

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

XML - 198.1 KB -

Data

Input file used in skyline_beast.sh to run the skyline plot analysis in BEAST software which estimates the variation of the effective population size through time. This file was created with BEAUti program of BEAST See details in Ben Chehida et al. (2020, Scientific Reports, DOI:...

Trimmomatics.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 1.3 KB -

Code

Bash script used to clean the raw read (fastq format) with trimmomatic. Additional information is provided in Text S1 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

entomo_gites_larvaires_ci_l0_columns_labels.tab

Mar 10, 2020 - Identification et caractérisation des gîtes larvaires d'Anopheles spp. dans la région de Korhogo, nord Côte d'Ivoire, 2016-2017

Tabular Data - 2.2 KB - 5 Variables, 49 Observations -

Data dictionaryDocumentation

entomo_gites_larvaires_ci_l0_data.tab

Mar 10, 2020 - Identification et caractérisation des gîtes larvaires d'Anopheles spp. dans la région de Korhogo, nord Côte d'Ivoire, 2016-2017

Tabular Data - 289.9 KB - 50 Variables, 808 Observations -

Data

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