Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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ViroSeek.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 19.0 KB - MD5: bb066b58a76dc650fbac505c952367ea
Code
Nextflow pipeline script for ViroSeek.
ViroSeek_installation.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.3 KB - MD5: f5897ee7f60af645bc78c137f81219c2
Documentation
Installation instructions for ViroSeek.
ViroSeek_use.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 5.2 KB - MD5: c866404f09f72947138f19eac6522732
Documentation
Tutorial for running ViroSeek pipeline.
hpc.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.3 KB - MD5: 24cc5d0534a6ce794c1db131d587084d
Code
config file for ViroSeek
local.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.4 KB - MD5: d508e27df6f8d6455c5d58541b5ea4cb
Code
config file for ViroSeek
softwares.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.3 KB - MD5: d11ae45cec6111c0c66f0d5fc2fd792e
Code
config file for ViroSeek
bash.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 2.5 KB - MD5: b649eebd4f6c95ac03d00216f350fb10
Code
Modules for ViroSeek
bbmap.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 703 B - MD5: bf58b3022533d8462dd24767a7836ea5
Code
Modules for ViroSeek
database.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 4.7 KB - MD5: 2419139d79b21746c53a0606924c874e
Code
Modules for ViroSeek
diamond.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 733 B - MD5: dc73cc4f36a02855d2bdfa9aaa9b0e17
Code
Modules for ViroSeek
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