UMR MIVEGEC

Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.

L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.

Porpoises genetics and genomics

REACT Project

REACT2 Project

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271 to 280 of 295 Results

oocyst.txt Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code Plain Text - 2.7 KB - MD5: 569a671ec0bd9a022936401d3249328c Data Data used to estimate the infection prevalence and intensity in mosquito gut at 7 days post blood meal (dpbm)
sporozoite.txt Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code Plain Text - 5.9 KB - MD5: c108756a0879129ada5a8bbf5dcfc47f Data Data used to estimate the infection prevalence and intensity in mosquito head/thoraces upon death
A large-scale serological survey in pets from October 2020 through June 2021 in France shows significantly higher exposure to SARS-CoV-2 in cats Dec 26, 2022 Matthieu, Fritz; Elguero Eric; Pierre, Becquart; De Riols De Fonclare Daphné,; Garcia Déborah; Beurlet Stephanie; Solène, Denolly; Bertrand, Boson; Rosolen Serge, G.; Cosset François-Loïc; Briend-Marchal Alexandra; Vincent, Legros; Leroy Eric, M., 2022, "A large-scale serological survey in pets from October 2020 through June 2021 in France shows significantly higher exposure to SARS-CoV-2 in cats", https://doi.org/10.5281/zenodo.8125085, Zenodo Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can infect many animals, including pets such as dogs and cats. Many studies have documented infection in companion animals by bio-molecular and serological methods. However, only a few have compared seroprevalence in ca... Cet ensemble de de données est moissonné auprès de nos partenaires. En cliquant sur le lien, vous accédez directement au dépôt source des données.
1_TtmappednewTtvar_biallelic.vcf.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 704.4 MB - MD5: 4461877afe51bc505f570808593aa7c0 Data Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.
2_Tursiops_unlinkedSNPs.beagle.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 85.1 MB - MD5: 8fe3f103955bdd7dd145c316dc008fe6 Data Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...
3_Tursiops_ALL.haplo.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 108.0 MB - MD5: e7909efb3649e2ac35f3cb17268be917 Data haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...
4_GhostAncestry-master.tar.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 8.8 KB - MD5: d5234dbb967ad08679ed0eb346e3308e Code GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...
Tursiop_samples_ALL.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 351 B - MD5: 8b7e2ce3192a5f460626c00d41c18f65 Data Names of the samples and their order. See materials and methods and supplementary material for details on data generation
Tursiop_samples_no7Tt182.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 344 B - MD5: 734cebd2c7212d5a5b48cead8ebd0d42 Data Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation
Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Mar 11, 2021 - Porpoises genetics and genomics Ben Chehida, Yacine; Loughnane, Roisin; Thumloup, Julie; Kaschner, Kristin; Garilao, Cristina; Rosel, Patricia E.; Fontaine, Michael C., 2021, "Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications", https://doi.org/10.23708/LMH8Y8, DataSuds, V1, UNF:6:j1jcc4A1Rs+FEedPbYzYIQ== [fileUNF] These data are accompanying the manuscript "No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications" by Ben Chehida Y., Loughnane R., Thumloup J., Kaschner K., Garilao C., Rosel P.E., & Fontaine M.C. The manuscript has been posted as...

oocyst.txt

Apr 20, 2023 - Intervention reducing malaria parasite load in vector mosquitoes: no impact on Plasmodium falciparum extrinsic incubation period and the survival of Anopheles gambiae: analysis data and code

Plain Text - 2.7 KB -

Data

Data used to estimate the infection prevalence and intensity in mosquito gut at 7 days post blood meal (dpbm)

sporozoite.txt

Plain Text - 5.9 KB -

Data

Data used to estimate the infection prevalence and intensity in mosquito head/thoraces upon death

A large-scale serological survey in pets from October 2020 through June 2021 in France shows significantly higher exposure to SARS-CoV-2 in cats

Dec 26, 2022

Matthieu, Fritz; Elguero Eric; Pierre, Becquart; De Riols De Fonclare Daphné,; Garcia Déborah; Beurlet Stephanie; Solène, Denolly; Bertrand, Boson; Rosolen Serge, G.; Cosset François-Loïc; Briend-Marchal Alexandra; Vincent, Legros; Leroy Eric, M., 2022, "A large-scale serological survey in pets from October 2020 through June 2021 in France shows significantly higher exposure to SARS-CoV-2 in cats", https://doi.org/10.5281/zenodo.8125085, Zenodo

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can infect many animals, including pets such as dogs and cats. Many studies have documented infection in companion animals by bio-molecular and serological methods. However, only a few have compared seroprevalence in ca...

Cet ensemble de de données est moissonné auprès de nos partenaires. En cliquant sur le lien, vous accédez directement au dépôt source des données.

1_TtmappednewTtvar_biallelic.vcf.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 704.4 MB -

Data

Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.

2_Tursiops_unlinkedSNPs.beagle.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 85.1 MB -

Data

Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...

3_Tursiops_ALL.haplo.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 108.0 MB -

Data

haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...

4_GhostAncestry-master.tar.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 8.8 KB -

Code

GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...

Tursiop_samples_ALL.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 351 B -

Data

Names of the samples and their order. See materials and methods and supplementary material for details on data generation

Tursiop_samples_no7Tt182.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 344 B -

Data

Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation

Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Mar 11, 2021 - Porpoises genetics and genomics

Ben Chehida, Yacine; Loughnane, Roisin; Thumloup, Julie; Kaschner, Kristin; Garilao, Cristina; Rosel, Patricia E.; Fontaine, Michael C., 2021, "Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications", https://doi.org/10.23708/LMH8Y8, DataSuds, V1, UNF:6:j1jcc4A1Rs+FEedPbYzYIQ== [fileUNF]

These data are accompanying the manuscript "No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications" by Ben Chehida Y., Loughnane R., Thumloup J., Kaschner K., Garilao C., Rosel P.E., & Fontaine M.C. The manuscript has been posted as...

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