Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Advanced Search

21 to 30 of 246 Results
Virustaxo.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 796 B - MD5: 0795e28824f2eea8ac17a2831eff3fa2
Code
Virustaxo command script.
asv1.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056
Données
Fasta file required for ViroSeek_downstream_analysis.rmd
compile2.py
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: 5b7a5150bc4f3414b6258c75ab30f952
Code
Script for summarising for each taxonomic assignment
metadataencours.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 330 B - 6 Variables, 6 Observations - UNF:6:G/lBLbWcA/mrI8LJUMN5ww==
Données
Excel for ViroSeek_downstream_analysis.rmd
Viroseek_downstream_analysis.Rmd
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
R Notebook - 26.7 KB - MD5: 5388991cf49f2d17c247556d77e1860e
Code
Rmarkdown for downstream analysis
nextflow.config
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 4.9 KB - MD5: 538bb795c3b1d2357fb0b8d3eb09bd1a
Code
Configuration file for ViroSeek Nextflow execution.
ViroSeek.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 14.9 KB - MD5: d6ab166a9087903150a31e61072a1e08
Code
Nextflow pipeline script for ViroSeek.
ViroSeek_installation.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 4.1 KB - MD5: a1d94219484866a57a948d13881802b9
Documentation
Installation instructions for ViroSeek.
ViroSeek_use.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.7 KB - MD5: a227c3711141ee2641eacea0422e3066
Documentation
Tutorial for running ViroSeek pipeline.
bash.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 2.4 KB - MD5: 000890f8685ca18eac744416df40240e
Code
Modules for ViroSeek
Add Data

Log in to create a dataverse or add a dataset.

Log In
Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.