Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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21 to 30 of 269 Results
20250418_simplice_expt02_v03.txt
May 28, 2026 - Replication data and R code for: Commercial permethrin elicits chemoreceptive responses on different Anopheles gambiae sensory appendages
Plain Text - 48.3 KB - MD5: 6dfa7aa9263273085ca75f7874c15e58
Code
R code for analyses & plots for Fig01 F
ReadMe_10-23708-IMJ1WG.txt
May 28, 2026 - Replication data and R code for: Commercial permethrin elicits chemoreceptive responses on different Anopheles gambiae sensory appendages
Plain Text - 2.9 KB - MD5: 107fbce6f3e042f0ed36308e0d042ce4
Documentation
contains the citation, description and conditions of use, or even access, depending on the case, to the dataset
READ_ME.txt
May 28, 2026 - Replication data and R code for: Commercial permethrin elicits chemoreceptive responses on different Anopheles gambiae sensory appendages
Plain Text - 3.0 KB - MD5: 72239ce37516589c16b06b25a640b04a
Documentation
Overview of contents for files containing data
asv1.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056
Données
Fasta file required for ViroSeek_downstream_analysis.rmd
bash.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 2.4 KB - MD5: 000890f8685ca18eac744416df40240e
Code
Modules for ViroSeek
bbmap.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 693 B - MD5: e8fa0db631cf655672f252ca01ef8789
Code
Modules for ViroSeek
bioawk.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 655 B - MD5: 76915c2d9c8fc0265abb386b301e7c73
Code
Modules for ViroSeek
CAMISIM_script.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 4.3 KB - MD5: 7d1270ccb9f41129020b74093984e1ba
Code
Script to generate simulated paired-end metagenomic samples
compile2.py
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: 5b7a5150bc4f3414b6258c75ab30f952
Code
Script for summarising for each taxonomic assignment
diamond.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 609 B - MD5: 2f3f68a8fbdf184b809440c61df968ef
Code
Modules for ViroSeek
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