UMR MIVEGEC

Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.

L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.

Porpoises genetics and genomics

REACT Project

REACT2 Project

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31 to 40 of 246 Results

bbmap.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 693 B - MD5: e8fa0db631cf655672f252ca01ef8789 Code Modules for ViroSeek
bioawk.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 655 B - MD5: 76915c2d9c8fc0265abb386b301e7c73 Code Modules for ViroSeek
diamond.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 609 B - MD5: 2f3f68a8fbdf184b809440c61df968ef Code Modules for ViroSeek
fastp.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 1.0 KB - MD5: 954846bb0b0e5e86f08b763401828ef2 Code Modules for ViroSeek
fastqc.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 504 B - MD5: ea6a2ab0faa9f087aaf971d78d34c5d7 Code Modules for ViroSeek
minimap2.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 541 B - MD5: 7663be48edce58e4303d6e1b4017cde5 Code Modules for ViroSeek
samtools.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 1.1 KB - MD5: c5246bbf7b8f446389b6dd4b2feba108 Code Modules for ViroSeek
spades.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 637 B - MD5: 9c01725862db0c87919a61d210fbea38 Code Modules for ViroSeek
taxonkit.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 585 B - MD5: 1176ab0876dfb3dc42f6349535cec6ca Code Modules for ViroSeek
trimgalore.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 608 B - MD5: b85ebab75a77b0fa51ff011d4e8daf9b Code Modules for ViroSeek

bbmap.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 693 B -

Code

Modules for ViroSeek

bioawk.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 655 B -

Code

Modules for ViroSeek

diamond.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 609 B -

Code

Modules for ViroSeek

fastp.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 1.0 KB -

Code

Modules for ViroSeek

fastqc.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 504 B -

Code

Modules for ViroSeek

minimap2.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 541 B -

Code

Modules for ViroSeek

samtools.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 1.1 KB -

Code

Modules for ViroSeek

spades.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 637 B -

Code

Modules for ViroSeek

taxonkit.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 585 B -

Code

Modules for ViroSeek

trimgalore.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 608 B -

Code

Modules for ViroSeek

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