Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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61 to 70 of 223 Results
Romero_et_al_GBE2024_AMOVA.tar.gz
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Gzip Archive - 912.2 KB - MD5: 2cc81cffaff0960a37cd965b2f5bfc5d
CodeDataDocumentation
Input files, R-scripts, and raw results required to reproduce the Analysis of Molecular Variance (AMOVA) on the Ag1000G data. The tar archive includes: (1) the multi-fasta DNA sequence input files (.fasta) with the sequence name including the sample-ID + pop_id + [ groups ID ] ;...
Romero_et_al_GBE2024_final_alignment_new_header_no_loop_no_insertions_only_coding_1222seq.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 17.3 MB - MD5: 4874423647b8174bbbf249bf04a5968b
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for all the samples considered (n=1222). These include the 1142 samples from the Anopheles gambiae 1000 genome project (2020), those of the Anopheles gambiae complex from Fontaine et al. 201...
Romero_et_al_GBE2024_final_alignment_new_header_no_loop_no_insertions_only_coding_withoutoutgroup_sorted_1142seq_Ag1000G.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 16.2 MB - MD5: 4ece8cead64adf08c08b3ca4f75964af
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for the 1142 samples from the Anopheles gambiae 1000 genome project (2020). Sample ID are as detailed in Table S2 of the paper. Note that the control region is excluded from the alignment (s...
Romero_et_al_GBE2024_Romero_pipeline_AGC_Fontaine_etal_2015_final_alignment_new_header_no_loop_no_insertions_only_coding_80seq.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 1.1 MB - MD5: 44d5c75f8c8fdad58a6f4be465c1c576
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for the samples of the Anopheles gambiae complex from Fontaine et al. 2015, and the two outgroup species (Anopheles chrsityi and Anopheles epiroticus). Sample ID are as detailed in Table S1...
Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Jun 24, 2024
Kambou, Sassan Simplice; Valente, Adeline; Agnew, Philip; Hien, Domonbabele Francois De Sales; Yerbanga, Rakiszendé Serge; Moiroux, Nicolas; Dabire, Kounbor Roch; Pennetier, Cedric; Cohuet, Anna; Carrasco, David, 2024, "Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes", https://doi.org/10.23708/IMJ1WG, DataSuds, V1
Pyrethroids are the most widely used insecticides to control vector borne diseases including malaria. Physiological resistance mechanisms to these insecticides have been well described, whereas those for behavioral resistance remain overlooked. Field data suggest the presence of...
0_ReadMe.txt
Jun 24, 2024 - Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Plain Text - 2.8 KB - MD5: f82cd8442b59b02eda7d054223ca1de5
Documentation
ReadMe file - data citation, description and terms of use.
Kambou_et_al_insecticide_data.txt
Jun 24, 2024 - Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Plain Text - 22.0 KB - MD5: 6b4088edd47f217e807617cabe22f82a
Data
Text file containing raw data for the number of female mosquitoes responding, or not responding, to the experimental stimuli in each replicate of each treatment.
Kambou_et_al_r_code.txt
Jun 24, 2024 - Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Plain Text - 19.8 KB - MD5: a98a7b4cbd30efb3f10069df97034207
Code
Text file containing notes & R script to analyse the accompanying data
Kambou_et_al_variables_data_dictionary.txt
Jun 24, 2024 - Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Plain Text - 1.6 KB - MD5: 5fe23977159c2c7cf3a3fcb68d5ba7cc
Documentation
Description of the variables in 'Kambou_et_al_insecticide_data.txt'
Land use land cover ultra-high-spatial-resolution digital maps (5-cm) for 4 urban districts of the city of Bouaké (Air France, Belleville, Koko, Sossoribougou), center Côte d'Ivoire, 2020
Land use land cover ultra-high-spatial-resolution digital maps (5-cm) for 4 urban districts of the city of Bouaké (Air France, Belleville, Koko, Sossoribougou), center Côte d'Ivoire, 2020
May 24, 2024
Kouassi, Arsène Adou; Taconet, Paul; Koné, Aboubacar; Koffi, Laurent Niamien; Catry, Thibault; Marti, Renaud; Dessay, Nadine; Delaitre, Eric; Fournet, Florence, 2023, "Land use land cover ultra-high-spatial-resolution digital maps (5-cm) for 4 urban districts of the city of Bouaké (Air France, Belleville, Koko, Sossoribougou), center Côte d'Ivoire, 2020", https://doi.org/10.23708/PUYNSG, DataSuds, V3, UNF:6:dyGQe7mTss4FO+8xYhWzng== [fileUNF]
This dataset provides ultra-high-spatial-resolution Land Use / Land Cover (LULC) digital maps of 4 urban districts of Bouaké, a city located in center Côte d’Ivoire (Ivory Coast). They were produced using images acquired by Unmanned Aerial Vehicles (UAVs) in 2020 at a spatial res...
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