UMR MIVEGEC

Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.

L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.

Porpoises genetics and genomics

REACT Project

REACT2 Project

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61 to 70 of 246 Results

Genetic_map_vivax_13.txt Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Plain Text - 813.4 KB - MD5: 217facc39bc4c9772274e57d31def4e3 Données Genetic map of P. vivax for chromosome 13. Originally published in: Lefebvre et al., PLOS Pathogens (2023), doi: 10.1371/journal.ppat.1012811
Genetic_map_vivax_14.txt Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Plain Text - 973.7 KB - MD5: 954cf9addc4cc2b8b64185b2fb6696ba Données Genetic map of P. vivax for chromosome 14. Originally published in: Lefebvre et al., PLOS Pathogens (2023), doi: 10.1371/journal.ppat.1012811
Scripts_EvoSimium.tar.xz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." XZ Archive - 651.6 KB - MD5: 130beebb761ae61b6c9803e5d94729cf Code Archive of the Github repository associated with this publication (MargauxLefebvre/EvoHistory_Simium). Version of September 2025.
VivaxSimium_core.snpbi_filtered.PvP01_01_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 47.4 MB - MD5: 2dc22107d53f57aee2f3d3c55e56ec51 Données Filtered SNP polymorphism data in VCF format of chromosome 01, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_02_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 38.4 MB - MD5: 74b0c08085b23bf9fe617132564398da Données Filtered SNP polymorphism data in VCF format of chromosome 02, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_03_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 45.4 MB - MD5: 62b01b9c2497932dc41f9c081a5ea44e Données Filtered SNP polymorphism data in VCF format of chromosome 03, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_04_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 41.6 MB - MD5: 450bed51819dd450670f7b9636028401 Données Filtered SNP polymorphism data in VCF format of chromosome 04, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_05_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 73.2 MB - MD5: 6bbfab8b3a5ee175f04de9cfa6b81a6a Données Filtered SNP polymorphism data in VCF format of chromosome 05, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_06_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 53.3 MB - MD5: 410cb210bafb99157c5d28b08c86b8ae Données Filtered SNP polymorphism data in VCF format of chromosome 06, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.
VivaxSimium_core.snpbi_filtered.PvP01_07_v1.ploidy2.vcf.gz Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America." Gzip Archive - 81.4 MB - MD5: a2829289109f0872491529db7723db80 Données Filtered SNP polymorphism data in VCF format of chromosome 07, only core genomic regions and bi-allelic SNPs, corresponding to dataset_HF in the publication.

Genetic_map_vivax_13.txt

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Plain Text - 813.4 KB -

Données

Genetic map of *P. vivax* for chromosome 13. Originally published in: *Lefebvre et al.*, *PLOS Pathogens* (2023), doi: 10.1371/journal.ppat.1012811

Genetic_map_vivax_14.txt

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Plain Text - 973.7 KB -

Données

Genetic map of *P. vivax* for chromosome 14. Originally published in: *Lefebvre et al.*, *PLOS Pathogens* (2023), doi: 10.1371/journal.ppat.1012811

Scripts_EvoSimium.tar.xz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

XZ Archive - 651.6 KB -

Code

Archive of the Github repository associated with this publication (MargauxLefebvre/EvoHistory_Simium). Version of September 2025.

VivaxSimium_core.snpbi_filtered.PvP01_01_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 47.4 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 01, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_02_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 38.4 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 02, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_03_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 45.4 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 03, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_04_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 41.6 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 04, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_05_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 73.2 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 05, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_06_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 53.3 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 06, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

VivaxSimium_core.snpbi_filtered.PvP01_07_v1.ploidy2.vcf.gz

Sep 24, 2025 - Replication data for "Genomic insights into host shifts between Plasmodium vivax and Plasmodium simium in Latin America."

Gzip Archive - 81.4 MB -

Données

Filtered SNP polymorphism data in VCF format of chromosome 07, only core genomic regions and bi-allelic SNPs, corresponding to *dataset_HF* in the publication.

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