UMR PHIM

Plant Health Institute of Montpellier

Among the interactions between the plant and its environment (microbial organisms or insects, whether pathogenic or beneficial), the research unit studies those that have an impact on plant health, growth and productivity. The unit is organized in 4 research departments:

Plant-pathogen interactions (ITEM)
Plant-vector-pathogen interactions (VIROM)
Towards an understanding of the phytobiome (PHYTOBIOM)
Understanding epidemics in the field (PRISM)

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1 to 7 of 7 Results

Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data Mar 24, 2023 - LMI PathoBios Billard, Estelle; Thomas, Emilie; Perez, Manon; Boyer, Pascaline; Tollenaere, Charlotte, 2023, "Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data", https://doi.org/10.23708/MDQIUE, DataSuds, V1, UNF:6:s6z/ab1uEzE8BGyoZ906Dw== [fileUNF] The rice yellow mottle virus (RYMV) constitutes a major threat to the actual development of rice cultivation in Africa. As climate change and agricultural intensification increase the risk of epidemics, there is an urgent need to understand the spatio-temporal dynamics of RYMV at...
Yellow mottle disease epidemiology: RYMV specific detection in field-collected leaves from western Burkina Faso (2015-2019) Mar 23, 2023 - LMI PathoBios Barro, Mariam; Sérémé, Drissa; Bangratz, Martine; Kassankogno, Itolou Abalo; Wonni, Issa; Poulicard, Nils; Tollenaere, Charlotte, 2023, "Yellow mottle disease epidemiology: RYMV specific detection in field-collected leaves from western Burkina Faso (2015-2019)", https://doi.org/10.23708/GZCM1O, DataSuds, V1, UNF:6:QdAkQ0xLZwp669pBgerjJg== [fileUNF] This project aims at a better understanding of yellow mottle disease epidemiology, both at the regional level, by comparing irrigated areas to rainfed lowland rice, and at the within-field level. The study area is located in western Burkina Faso, in a 100x100kms region within the...
Analyses of the rice (Oryza spp.) transcriptome during infection with the root-knot nematode (Meloidogyne graminicola) Dec 23, 2022 Fernandez, Diana; Petitot, Anne-Sophie; Dereeper, Alexis, 2022, "Analyses of the rice (Oryza spp.) transcriptome during infection with the root-knot nematode (Meloidogyne graminicola)", https://doi.org/10.23708/1VFBVT, DataSuds, V1, UNF:6:QdPgnoH1UIS4e41AVlHNbw== [fileUNF] The root-knot nematode Meloidogyne graminicola is responsible for production losses in rice (Oryza sativa) in Asia and Latin America. The accession TOG5681 of African rice, O. glaberrima, presents improved resistance to several biotic and abiotic factors, including nematodes. The...
Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during rice (Oryza spp.) infection Dec 21, 2022 Fernandez, Diana; Petitot, Anne-Sophie; Dereeper, Alexis, 2022, "Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during rice (Oryza spp.) infection", https://doi.org/10.23708/CTTFQW, DataSuds, V1, UNF:6:RP6B9JcVkkPIxyMZCSMH3Q== [fileUNF] The plant-parasitic nematode Meloidogyne graminicola causes considerable damages to rice (Oryza sativa) culture. Resistance to M. graminicola in the related species Oryza glaberrima reduces root penetration by juveniles and stops further nematode development. M. graminicola genes...
Supplementary information for "The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility" Mar 3, 2022 Doucouré, Hinda; Auguy, Florence; Blanvillain-Baufumé, Servane; Fabre, Sandrine; Gabriel, Marc; Thomas, Emilie; Dambreville, Fleur; Sciallano, Coline; Szurek, Boris; Koita, Ousmane; Verdier, Valérie; Cunnac, Sebastien, 2022, "Supplementary information for "The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility"", https://doi.org/10.23708/XBTRUV, DataSuds, V1, UNF:6:jdkGW/8VhWIPR5jUnVyxTw== [fileUNF] This dataset contains additional supporting information related to the discovery of an alternative transcriptional target locus of the Xanthomonas oryzae pv. oryzae (Xoo) TalC effector in the rice genome as described in a manuscript submitted for publication. Xoo strains that cau...
Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Sep 30, 2021 Reshetnyak, Ganna; Jacobs, Jonathan M.; Auguy, Florence; Sciallano, Coline; Claude, Lisa; Medina, Clemence; Perez-Quintero, Alvaro J.; Comte, Aurore; Thomas, Emilie; Bogdanove, Adam; Koebnik, Ralf; Szurek, Boris; Dievart, Anne; Brugidou, Christophe; Lacombe, Severine; Cunnac, Sebastien, 2021, "Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"", https://doi.org/10.23708/RXIXM3, DataSuds, V2 This dataset contains additional supporting information and source code related to the discovery of Xanthomonas-induced small RNAs (xisRNAs) as described in the Related Publication. Deep small RNA (sRNA) sequencing analysis discovered a class of sRNA in rice (Oryza sativa) specif...
Spatiotemporal survey of major rice diseases in western Burkina Faso Apr 22, 2021 - LMI PathoBios Barro, Mariam; Tollenaere, Charlotte; Wonni, Issa; Kassankogno, Itolou Abalo; Sereme, Drissa, 2021, "Spatiotemporal survey of major rice diseases in western Burkina Faso", https://doi.org/10.23708/8FDWIE, DataSuds, V1, UNF:6:cOi1B77EUelpAGcUzEjhog== [fileUNF] The study area is located in western Burkina Faso, in a 100x100kms region within the three provinces Houet, Kénédougou and Comoé, in the sudanian bioclimatic area. Major study sites correspond to three geographical zone (Bama, Banzon and Karfiguela), each of these zones presentin...

Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data

Mar 24, 2023 - LMI PathoBios

Billard, Estelle; Thomas, Emilie; Perez, Manon; Boyer, Pascaline; Tollenaere, Charlotte, 2023, "Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data", https://doi.org/10.23708/MDQIUE, DataSuds, V1, UNF:6:s6z/ab1uEzE8BGyoZ906Dw== [fileUNF]

The rice yellow mottle virus (RYMV) constitutes a major threat to the actual development of rice cultivation in Africa. As climate change and agricultural intensification increase the risk of epidemics, there is an urgent need to understand the spatio-temporal dynamics of RYMV at...

Yellow mottle disease epidemiology: RYMV specific detection in field-collected leaves from western Burkina Faso (2015-2019)

Mar 23, 2023 - LMI PathoBios

Barro, Mariam; Sérémé, Drissa; Bangratz, Martine; Kassankogno, Itolou Abalo; Wonni, Issa; Poulicard, Nils; Tollenaere, Charlotte, 2023, "Yellow mottle disease epidemiology: RYMV specific detection in field-collected leaves from western Burkina Faso (2015-2019)", https://doi.org/10.23708/GZCM1O, DataSuds, V1, UNF:6:QdAkQ0xLZwp669pBgerjJg== [fileUNF]

This project aims at a better understanding of yellow mottle disease epidemiology, both at the regional level, by comparing irrigated areas to rainfed lowland rice, and at the within-field level. The study area is located in western Burkina Faso, in a 100x100kms region within the...

Analyses of the rice (Oryza spp.) transcriptome during infection with the root-knot nematode (Meloidogyne graminicola)

Dec 23, 2022

Fernandez, Diana; Petitot, Anne-Sophie; Dereeper, Alexis, 2022, "Analyses of the rice (Oryza spp.) transcriptome during infection with the root-knot nematode (Meloidogyne graminicola)", https://doi.org/10.23708/1VFBVT, DataSuds, V1, UNF:6:QdPgnoH1UIS4e41AVlHNbw== [fileUNF]

The root-knot nematode Meloidogyne graminicola is responsible for production losses in rice (Oryza sativa) in Asia and Latin America. The accession TOG5681 of African rice, O. glaberrima, presents improved resistance to several biotic and abiotic factors, including nematodes. The...

Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during rice (Oryza spp.) infection

Dec 21, 2022

Fernandez, Diana; Petitot, Anne-Sophie; Dereeper, Alexis, 2022, "Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during rice (Oryza spp.) infection", https://doi.org/10.23708/CTTFQW, DataSuds, V1, UNF:6:RP6B9JcVkkPIxyMZCSMH3Q== [fileUNF]

The plant-parasitic nematode Meloidogyne graminicola causes considerable damages to rice (Oryza sativa) culture. Resistance to M. graminicola in the related species Oryza glaberrima reduces root penetration by juveniles and stops further nematode development. M. graminicola genes...

Supplementary information for "The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility"

Mar 3, 2022

Doucouré, Hinda; Auguy, Florence; Blanvillain-Baufumé, Servane; Fabre, Sandrine; Gabriel, Marc; Thomas, Emilie; Dambreville, Fleur; Sciallano, Coline; Szurek, Boris; Koita, Ousmane; Verdier, Valérie; Cunnac, Sebastien, 2022, "Supplementary information for "The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility"", https://doi.org/10.23708/XBTRUV, DataSuds, V1, UNF:6:jdkGW/8VhWIPR5jUnVyxTw== [fileUNF]

This dataset contains additional supporting information related to the discovery of an alternative transcriptional target locus of the Xanthomonas oryzae pv. oryzae (Xoo) TalC effector in the rice genome as described in a manuscript submitted for publication. Xoo strains that cau...

Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Sep 30, 2021

Reshetnyak, Ganna; Jacobs, Jonathan M.; Auguy, Florence; Sciallano, Coline; Claude, Lisa; Medina, Clemence; Perez-Quintero, Alvaro J.; Comte, Aurore; Thomas, Emilie; Bogdanove, Adam; Koebnik, Ralf; Szurek, Boris; Dievart, Anne; Brugidou, Christophe; Lacombe, Severine; Cunnac, Sebastien, 2021, "Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"", https://doi.org/10.23708/RXIXM3, DataSuds, V2

This dataset contains additional supporting information and source code related to the discovery of Xanthomonas-induced small RNAs (xisRNAs) as described in the Related Publication. Deep small RNA (sRNA) sequencing analysis discovered a class of sRNA in rice (Oryza sativa) specif...

Spatiotemporal survey of major rice diseases in western Burkina Faso

Apr 22, 2021 - LMI PathoBios

Barro, Mariam; Tollenaere, Charlotte; Wonni, Issa; Kassankogno, Itolou Abalo; Sereme, Drissa, 2021, "Spatiotemporal survey of major rice diseases in western Burkina Faso", https://doi.org/10.23708/8FDWIE, DataSuds, V1, UNF:6:cOi1B77EUelpAGcUzEjhog== [fileUNF]

The study area is located in western Burkina Faso, in a 100x100kms region within the three provinces Houet, Kénédougou and Comoé, in the sudanian bioclimatic area. Major study sites correspond to three geographical zone (Bama, Banzon and Karfiguela), each of these zones presentin...

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