RiceGraph_MGC.gfa

This file is part of "Data used for the analysis described in GrAnnoT paper".

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Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5; RiceGraph_MGC.gfa [fileName]
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Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5
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Data
MD5 17cccb331973224bd4073066369cf1f2
Deposit Date 2025-03-13
Metadata Release Date 2025-03-18
Publication Date 2025-03-18
Size 4.1 GB
Type Unknown
File Path rice/
Description Asian rice pangenome graph built with the Nipponbare genome from the paper from 2020 by Zhou, Y., Chebotarov, D., Kudrna, D. et al., "A platinum standard pan-genome resource that represents the population structure of Asian rice" (doi:10.1038/s41597-020-0438-2), and 12 other genomes from the paper from 2013 by Kawahara, Y., de la Bastide, M., Hamilton, J.P. et al., "Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data" (doi:10.1186/1939-8433-6-4). The reference genome used for building the graph is Nipponbare.
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