Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data

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Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data
Kaczmarek, Thomas; Causse, Sandrine; Abdul, Suleiman Dangana; Abraham, Solomon; Achigan-Dako, Enoch G.; Adje, Charlotte; Adjebeng-Danquah, Joseph; Agyare, Richard Y.; Akanvou, Louise; Bakasso, Yacoubou; Barry, Mamadou B.; Bonsu, Samuel K.; Calatayud, Caroline; Conde, Soukeye; Couderc, Marie; Dachi, Stephen N.; Diallo, T; Diop, Baye M.; Deu, Monique; Gueye, Mame C.; Ibrahim Bio Yerima, Abdou R.; Issah, Abdul R; Kane, Ndjido Ardo; Kombiok, James M.; Ngom, Ablaye; Noyer, Jean-Louis; Olodo, Katina; Oselebe, Happiness O.; Pham, Jean-Louis; Picquet, Marie; Puozaa, Doris K.; Rivallan, Ronan; Saidou, Sani; Sekloka, Emmanuel; Tengey, Theophilus K.; Uyoh, Edak; Vancoppenolle, Sylvie; Vigouroux, Yves; Zekraoui, Leila; Leclerc, Christian; Barnaud, Adeline; Billot, Claire, 2023, "Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data", https://doi.org/10.23708/TX5DE2, DataSuds, V1, UNF:6:3fJ9FCQhz8EPtGubWUVcZA== [fileUNF]
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Description

Neglected and under-utilized species represent important genetic resources and untapped reservoirs of diversity to address global food and nutrition challenges. Characterizing the extent of their genetic diversity and making it available is of prime importance to their wider use and to develop collaborative research networks.

White fonio (Digitaria exilis (Kippist) Stapf) is a small cereal domesticated and cultivated in West Africa. It represents locally important food resources for smallholder farmers of arid and semi-arid lands.

Using an unprecedented number of 1539 genotyped landraces, we assessed fonio genetic diversity and population structure across its entire area of cultivation with simple sequence repeat markers (SSRs). Results are available through an open and user-friendly R shiny application on this link.

We provide here two files:
(1) the passport data of the white fonio collection containing information for the 2372 accessions (ID, country, project, year of sampling, geographical coordinates and whether the accession was included or not in the genetic analyses).
(2) The SSRs data for the 1539 accessions successfully genotyped, associated with passport information. The genotypes were obtained with 14 microsatellites markers. For each marker, the score of the two alleles are separated by "/". Missing genotypes are coded "999/999".

(2023-02-24)
Subject Agricultural Sciences
Keyword Fonio, Genetic diversity, Microsatellites, West Africa
Related Publication Towards conservation and sustainable use of a neglected plant: a large partnership network enables the genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa [submitted]
Notes Data type: process-produced data
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FONIO_LIST_2372ID.tab
SSRs_DATA_FONIO/Tabular Data - 166.9 KB
Published Jul 12, 2023
9 Downloads
7 Variables, 2372 Observations UNF:6:EA1GdWbKlAxvARCWP3v3wg==
List of the 2372 white fonio collection with passport information (country, project, geographical coordinates, year of sampling). A column indicates whether the accession was included or not in the genetic analyses. Clones are also indicated.
Data
SSRs_DATA_FONIO_1539ID.tab
SSRs_DATA_FONIO/Tabular Data - 294.4 KB
Published Jul 12, 2023
11 Downloads
20 Variables, 1539 Observations UNF:6:nqX4D5T4z/xl5aC5ZR319A==
SSRs data and passport information (including geographical coordinates) for the 1539 fonio accessions successfully genotyped.
DataGenomics
SSRs_DATA_FONIO_README.txt
SSRs_DATA_FONIO/Plain Text - 2.4 KB
Published Jul 12, 2023
8 Downloads
MD5: 9e6891c5735fcc1df88d462203fa664d
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