DYNADIV Team

The main focus of DYNADIV Team is
tounderstand how biodiversity of tropical plants is shaped through evolutionary forces resulting from human and environmental impacts.

Its activity is essentially based on population genetics but also integrates a multidisciplinary approach including ecology, botany, molecular phylogenetics and anthropology. It is structured around three axes:

Evolutionary history & domestication;
Diversity & conservation;
Global changes, diversity & adaptation.

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51 to 60 of 101 Results

ReadMe.txt Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Plain Text - 1.4 KB - MD5: d8868d8097c2c42550aea89348ffff81 Documentation Data citation, description and terms of use.
SNP_genotyping_1_ref_info-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 7.0 KB - 5 Variables, 142 Observations - UNF:6:5GHf/oRRquAFeU8gbioPxw== Documentation Contains information about the various Coffea reference samples from international collections used in the study, including the accession code , the species or accession name and origin, as well as the institution that hosts the collection
SNP_genotyping_2_kaspdata_80markers_26pind-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 460.6 KB - 86 Variables, 866 Observations - UNF:6:MU5AtJxYZNQIemBR43/J8Q== Data Contains data from KASP genotyping of 80 core SNP for Haitian, Guadeloupean and reference samples of Coffee trees
SNP_genotyping_3_canephora_dataset-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 13.7 KB - 63 Variables, 34 Observations - UNF:6:f+HXClTn/TUJ3oj+JiQGlA== Data Contains data from Haitian and Guadeloupe canephora field samples (KASP targeted genotyping) and from wild C. canephora (DNA chip array, published by Mérot-l'Anthoëne et al, 2019)
SNP_genotyping_4_liberica_dataset-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 4.5 KB - 46 Variables, 15 Observations - UNF:6:wqailoQGx0VAgAOPOWhA5A== Data Contains data from KASP targeted genotyping of reference and Guadeloupean field samples of Coffea liberica, as well as two reference samples from each other species
SNP_genotyping_data_dictionary.pdf Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Adobe PDF - 48.2 KB - MD5: 103fa04d275ad12beafa60cc3ed0b2b8 Documentation Data dictionary and referenties
SNP_genotyping_htglcoffeedata-2.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 5.8 KB - 2 Variables, 9 Observations - UNF:6:C+8gMYcWK/8iPVutLCKujw== DataDocumentation Original xls file with data and documentation
0_ReadMe.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 2.1 KB - MD5: 0ad59fd46069aaec2008347fc45ec2ce Documentation Dataset citation, description and terms of use.
chr5_5association.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 382.2 MB - MD5: 5888c01657ff5624ad88b8200d103076 Data This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).
GBS-chr2_raw.vcf.gz May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Gzip Archive - 53.7 MB - MD5: 7ac07ce9f286e974d6c5c572c40f78d8 Data VCF file containing the raw genomic data of pearl millet. This data file is associated with the script "S2_filter_VCF.html".These data are published in Berthouly-Salazar et al. (2016).

ReadMe.txt

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Plain Text - 1.4 KB -

Documentation

Data citation, description and terms of use.

SNP_genotyping_1_ref_info-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 7.0 KB - 5 Variables, 142 Observations -

Documentation

Contains information about the various Coffea reference samples from international collections used in the study, including the accession code , the species or accession name and origin, as well as the institution that hosts the collection

SNP_genotyping_2_kaspdata_80markers_26pind-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 460.6 KB - 86 Variables, 866 Observations -

Data

Contains data from KASP genotyping of 80 core SNP for Haitian, Guadeloupean and reference samples of Coffee trees

SNP_genotyping_3_canephora_dataset-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 13.7 KB - 63 Variables, 34 Observations -

Data

Contains data from Haitian and Guadeloupe canephora field samples (KASP targeted genotyping) and from wild C. canephora (DNA chip array, published by Mérot-l'Anthoëne et al, 2019)

SNP_genotyping_4_liberica_dataset-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 4.5 KB - 46 Variables, 15 Observations -

Data

Contains data from KASP targeted genotyping of reference and Guadeloupean field samples of Coffea liberica, as well as two reference samples from each other species

SNP_genotyping_data_dictionary.pdf

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Adobe PDF - 48.2 KB -

Documentation

Data dictionary and referenties

SNP_genotyping_htglcoffeedata-2.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 5.8 KB - 2 Variables, 9 Observations -

DataDocumentation

Original xls file with data and documentation

0_ReadMe.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 2.1 KB -

Documentation

Dataset citation, description and terms of use.

chr5_5association.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 382.2 MB -

Data

This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).

GBS-chr2_raw.vcf.gz

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Gzip Archive - 53.7 MB -

Data

VCF file containing the raw genomic data of pearl millet. This data file is associated with the script "S2_filter_VCF.html".These data are published in Berthouly-Salazar et al. (2016).

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