DYNADIV Team

The main focus of DYNADIV Team is
tounderstand how biodiversity of tropical plants is shaped through evolutionary forces resulting from human and environmental impacts.

Its activity is essentially based on population genetics but also integrates a multidisciplinary approach including ecology, botany, molecular phylogenetics and anthropology. It is structured around three axes:

Evolutionary history & domestication;
Diversity & conservation;
Global changes, diversity & adaptation.

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91 to 100 of 156 Results

SNP_genotyping_1_ref_info-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 7.0 KB - 5 Variables, 142 Observations - UNF:6:5GHf/oRRquAFeU8gbioPxw== Documentation Contains information about the various Coffea reference samples from international collections used in the study, including the accession code , the species or accession name and origin, as well as the institution that hosts the collection
SNP_genotyping_2_kaspdata_80markers_26pind-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 460.6 KB - 86 Variables, 866 Observations - UNF:6:MU5AtJxYZNQIemBR43/J8Q== Data Contains data from KASP genotyping of 80 core SNP for Haitian, Guadeloupean and reference samples of Coffee trees
SNP_genotyping_3_canephora_dataset-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 13.7 KB - 63 Variables, 34 Observations - UNF:6:f+HXClTn/TUJ3oj+JiQGlA== Data Contains data from Haitian and Guadeloupe canephora field samples (KASP targeted genotyping) and from wild C. canephora (DNA chip array, published by Mérot-l'Anthoëne et al, 2019)
SNP_genotyping_4_liberica_dataset-1.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 4.5 KB - 46 Variables, 15 Observations - UNF:6:wqailoQGx0VAgAOPOWhA5A== Data Contains data from KASP targeted genotyping of reference and Guadeloupean field samples of Coffea liberica, as well as two reference samples from each other species
SNP_genotyping_data_dictionary.pdf Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Adobe PDF - 48.2 KB - MD5: 103fa04d275ad12beafa60cc3ed0b2b8 Documentation Data dictionary and referenties
SNP_genotyping_htglcoffeedata-2.tab Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees Tabular Data - 5.8 KB - 2 Variables, 9 Observations - UNF:6:C+8gMYcWK/8iPVutLCKujw== DataDocumentation Original xls file with data and documentation
Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia) Sep 3, 2024 Hocedez, Juliette; Gotty, Karine; Hequet, Vanessa; Chay, Sandrine; Leopold, Audrey; Dray, Stéphane; Pillon, Yohan, 2024, "Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)", https://doi.org/10.23708/OJGC5S, DataSuds, V1 High species richness is observed in certain shrublands on infertile substrates. Mineral nutrients are likely to be the primary limiting resources in these ecosystems, and below-ground plant interactions may be crucial to understanding their diversity. Using ionomics, we investig...
Ionomic_data_shrubland_New_Caledonia_data_dictionary.txt Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia) Plain Text - 259 B - MD5: 43ee3ef45bc4957761ee4e845203752d Documentation Data dictionary
Ionomic_data_shrubland_New_Caledonia.tsv Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia) Tab-Separated Values - 72.5 KB - MD5: 635667eb8e0ff5ed163670f83ee72ffe Data Ionomic dataset of a 20 x 20 m plot of shrubland in Plaine des Lacs (New Caledonia). 23 elements were quantified in 475 individual plants. Element concentration are expressed in micrograms per gram (ppm) or percentage (%) of dry weight
High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) May 16, 2024 Barnaud, Adeline; Veltman, Margaretha; Kaczmarek, Thomas; Argout, Xavier; Vigouroux, Yves; Berthouly-Salazar, Cecile; Billot, Claire, 2024, "High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)", https://doi.org/10.23708/ETC16I, DataSuds, V1, UNF:6:ON0wb/ZYjxl4qqjnr8NEPA== [fileUNF] Marginal land is land that is of little agricultural value because crops produced there would be worth less than any rent paid for access to the area. Helping to develop such zones in Africa is a key goal for the EU-funded EWA-BELT project. The aim is to promote the sustainable i...

SNP_genotyping_1_ref_info-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 7.0 KB - 5 Variables, 142 Observations -

Documentation

Contains information about the various Coffea reference samples from international collections used in the study, including the accession code , the species or accession name and origin, as well as the institution that hosts the collection

SNP_genotyping_2_kaspdata_80markers_26pind-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 460.6 KB - 86 Variables, 866 Observations -

Data

Contains data from KASP genotyping of 80 core SNP for Haitian, Guadeloupean and reference samples of Coffee trees

SNP_genotyping_3_canephora_dataset-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 13.7 KB - 63 Variables, 34 Observations -

Data

Contains data from Haitian and Guadeloupe canephora field samples (KASP targeted genotyping) and from wild C. canephora (DNA chip array, published by Mérot-l'Anthoëne et al, 2019)

SNP_genotyping_4_liberica_dataset-1.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 4.5 KB - 46 Variables, 15 Observations -

Data

Contains data from KASP targeted genotyping of reference and Guadeloupean field samples of Coffea liberica, as well as two reference samples from each other species

SNP_genotyping_data_dictionary.pdf

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Adobe PDF - 48.2 KB -

Documentation

Data dictionary and referenties

SNP_genotyping_htglcoffeedata-2.tab

Sep 9, 2024 - SNP Genotyping data for Guadeloupean and Haitian coffee trees

Tabular Data - 5.8 KB - 2 Variables, 9 Observations -

DataDocumentation

Original xls file with data and documentation

Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)

Sep 3, 2024

Hocedez, Juliette; Gotty, Karine; Hequet, Vanessa; Chay, Sandrine; Leopold, Audrey; Dray, Stéphane; Pillon, Yohan, 2024, "Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)", https://doi.org/10.23708/OJGC5S, DataSuds, V1

High species richness is observed in certain shrublands on infertile substrates. Mineral nutrients are likely to be the primary limiting resources in these ecosystems, and below-ground plant interactions may be crucial to understanding their diversity. Using ionomics, we investig...

Ionomic_data_shrubland_New_Caledonia_data_dictionary.txt

Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)

Plain Text - 259 B -

Documentation

Data dictionary

Ionomic_data_shrubland_New_Caledonia.tsv

Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)

Tab-Separated Values - 72.5 KB -

Data

Ionomic dataset of a 20 x 20 m plot of shrubland in Plaine des Lacs (New Caledonia). 23 elements were quantified in 475 individual plants. Element concentration are expressed in micrograms per gram (ppm) or percentage (%) of dry weight

High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

May 16, 2024

Barnaud, Adeline; Veltman, Margaretha; Kaczmarek, Thomas; Argout, Xavier; Vigouroux, Yves; Berthouly-Salazar, Cecile; Billot, Claire, 2024, "High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)", https://doi.org/10.23708/ETC16I, DataSuds, V1, UNF:6:ON0wb/ZYjxl4qqjnr8NEPA== [fileUNF]

Marginal land is land that is of little agricultural value because crops produced there would be worth less than any rent paid for access to the area. Helping to develop such zones in Africa is a key goal for the EU-funded EWA-BELT project. The aim is to promote the sustainable i...

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