DYNADIV Team

The main focus of DYNADIV Team is
tounderstand how biodiversity of tropical plants is shaped through evolutionary forces resulting from human and environmental impacts.

Its activity is essentially based on population genetics but also integrates a multidisciplinary approach including ecology, botany, molecular phylogenetics and anthropology. It is structured around three axes:

Evolutionary history & domestication;
Diversity & conservation;
Global changes, diversity & adaptation.

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101 to 110 of 150 Results

Ionomic_data_shrubland_New_Caledonia_data_dictionary.txt Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia) Plain Text - 259 B - MD5: 43ee3ef45bc4957761ee4e845203752d Documentation Data dictionary
Ionomic_data_shrubland_New_Caledonia.tsv Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia) Tab-Separated Values - 72.5 KB - MD5: 635667eb8e0ff5ed163670f83ee72ffe Data Ionomic dataset of a 20 x 20 m plot of shrubland in Plaine des Lacs (New Caledonia). 23 elements were quantified in 475 individual plants. Element concentration are expressed in micrograms per gram (ppm) or percentage (%) of dry weight
0_ReadMe.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 2.1 KB - MD5: 0ad59fd46069aaec2008347fc45ec2ce Documentation Dataset citation, description and terms of use.
chr5_5association.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 382.2 MB - MD5: 5888c01657ff5624ad88b8200d103076 Data This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).
GBS-chr2_raw.vcf.gz May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Gzip Archive - 53.7 MB - MD5: 7ac07ce9f286e974d6c5c572c40f78d8 Data VCF file containing the raw genomic data of pearl millet. This data file is associated with the script "S2_filter_VCF.html".These data are published in Berthouly-Salazar et al. (2016).
Introduction.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 1.8 MB - MD5: fdde654296e7c56ad70fd3ee0a2ea070 Documentation This file presents the course, its objectives and the context in which it was implemented.
millet_filtered.vcf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) text/vcard - 34.5 MB - MD5: 6eab73245746d73169f90b8141511fa0 Data VCF file containing the genomic data of the pearl millet. This data file is associated with the script "S3_Genetic_diversity+structure.html".These data are published in Berthouly-Salazar et al. (2016).
millet_metadata.tab May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Tabular Data - 2.5 KB - 5 Variables, 55 Observations - UNF:6:LNg1C4IBq05VUN9bbZDOeQ== Data Table containing the passport data of the pearl millet accessions in the VCF file. This data file is associated with the script "S3_Genetic_diversity+structure.html". These data are published in Berthouly-Salazar et al. (2016).
S1_Download_R.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 288.7 KB - MD5: dbbdb9df803c84725df9ff5b4abc42f7 Documentation This file is a tutorial for installing R and RStudio.
S1_example.fastq May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Unknown - 3.6 KB - MD5: 3bc9d9f537ea4d956c4dc7f7970e7956 Data

Ionomic_data_shrubland_New_Caledonia_data_dictionary.txt

Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)

Plain Text - 259 B -

Documentation

Data dictionary

Ionomic_data_shrubland_New_Caledonia.tsv

Sep 3, 2024 - Ionomic data of a 20x20 m plot of shrubland in Plaine des Lacs (New Caledonia)

Tab-Separated Values - 72.5 KB -

Data

Ionomic dataset of a 20 x 20 m plot of shrubland in Plaine des Lacs (New Caledonia). 23 elements were quantified in 475 individual plants. Element concentration are expressed in micrograms per gram (ppm) or percentage (%) of dry weight

0_ReadMe.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 2.1 KB -

Documentation

Dataset citation, description and terms of use.

chr5_5association.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 382.2 MB -

Data

This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).

GBS-chr2_raw.vcf.gz

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Gzip Archive - 53.7 MB -

Data

VCF file containing the raw genomic data of pearl millet. This data file is associated with the script "S2_filter_VCF.html".These data are published in Berthouly-Salazar et al. (2016).

Introduction.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 1.8 MB -

Documentation

This file presents the course, its objectives and the context in which it was implemented.

millet_filtered.vcf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

text/vcard - 34.5 MB -

Data

VCF file containing the genomic data of the pearl millet. This data file is associated with the script "S3_Genetic_diversity+structure.html".These data are published in Berthouly-Salazar et al. (2016).

millet_metadata.tab

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Tabular Data - 2.5 KB - 5 Variables, 55 Observations -

Data

Table containing the passport data of the pearl millet accessions in the VCF file. This data file is associated with the script "S3_Genetic_diversity+structure.html". These data are published in Berthouly-Salazar et al. (2016).

S1_Download_R.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 288.7 KB -

Documentation

This file is a tutorial for installing R and RStudio.

S1_example.fastq

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Unknown - 3.6 KB -

Data

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