EVOGEC Team

EVOGEC Team: Evolution of Coffee trees Genomes

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1 to 10 of 559 Results

Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning Feb 1, 2021 Guyot, Romain; Orozco-Arias, Simon; Isaza, Gustavo, 2021, "Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning", https://doi.org/10.23708/QCMOUA, DataSuds, V2 Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) fo...
InpactorDB_non-redundant_V2.format.fasta Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning Unknown - 564.5 MB - MD5: e7d6bb2820ebf82252f7f39a4f583641 Data Fasta file for InpactorDB V2. NON-redundant database of LTR retrotransposons.
InpactorDB_redundant_V2_format.fasta.zip Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning ZIP Archive - 292.5 MB - MD5: 9f7291811eedd0b03d410035f24ae59c Data Fasta file for InpactorDB V2. Redundant database of LTR retrotransposons.
Photo bank for: WCSdb: A database of Wild Coffea Species Mar 10, 2020 Guyot, Romain; Hamon, Perla; Couturon, Emmanuel; Raharimalala, Nathalie; Rakotomalala, Jean-Jacques, 2020, "Photo bank for: WCSdb: A database of Wild Coffea Species", https://doi.org/10.23708/JZA8I2, DataSuds, V1, UNF:6:D4jmlyKfcJyf9HHyxzxguQ== [fileUNF] Coffee is a beverage enjoyed by millions of people worldwide and an important commodity for millions of people. Beside the two cultivated species (Coffea arabica and Coffea canephora), the 139 wild coffee species belong to the Coffea genus are largely unknown to coffee scientists...
1_List_species_photo_copyright.tab Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species Tabular Data - 46.1 KB - 1 Variables, 521 Observations - UNF:6:D4jmlyKfcJyf9HHyxzxguQ== Documentation List of species, pictures and copyright
Coffea_abbayesii_feuille_Madagascar.JPG Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species JPEG Image - 382.2 KB - MD5: 3df445d871bb31575f078b25e404bdd8 Data Coffea abbayesii (leaves), Madagascar
Coffea_abbayesii-fleur_Madagascar.JPG Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species JPEG Image - 195.2 KB - MD5: d3dd345f3bc41eabbe483869288b6ebb Data Coffea abbayesii (flower), Madagascar
Coffea_abbayesii_fruit_Madagascar.JPG Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species JPEG Image - 429.0 KB - MD5: f97dd7e38c5a7f4a78d721ed56e10d6f Data Coffea abbayesii (fruits), Madagascar
Coffea_abbayesii_fruits2_Madagascar.JPG Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species JPEG Image - 432.8 KB - MD5: ccb0de0ffea3013dab18b2f00a112e09 Data Coffea abbayesii (fruits), Madagascar
Coffea_abbayesii_graines_Madagascar.JPG Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species JPEG Image - 592.5 KB - MD5: 46fdb88cac9311ff127c2f4ee189b739 Data Coffea abbayesii (seeds), Madagascar

Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

Feb 1, 2021

Guyot, Romain; Orozco-Arias, Simon; Isaza, Gustavo, 2021, "Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning", https://doi.org/10.23708/QCMOUA, DataSuds, V2

Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) fo...

InpactorDB_non-redundant_V2.format.fasta

Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

Unknown - 564.5 MB -

Data

Fasta file for InpactorDB V2. NON-redundant database of LTR retrotransposons.

InpactorDB_redundant_V2_format.fasta.zip

Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

ZIP Archive - 292.5 MB -

Data

Fasta file for InpactorDB V2. Redundant database of LTR retrotransposons.

Photo bank for: WCSdb: A database of Wild Coffea Species

Mar 10, 2020

Guyot, Romain; Hamon, Perla; Couturon, Emmanuel; Raharimalala, Nathalie; Rakotomalala, Jean-Jacques, 2020, "Photo bank for: WCSdb: A database of Wild Coffea Species", https://doi.org/10.23708/JZA8I2, DataSuds, V1, UNF:6:D4jmlyKfcJyf9HHyxzxguQ== [fileUNF]

Coffee is a beverage enjoyed by millions of people worldwide and an important commodity for millions of people. Beside the two cultivated species (Coffea arabica and Coffea canephora), the 139 wild coffee species belong to the Coffea genus are largely unknown to coffee scientists...

1_List_species_photo_copyright.tab

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

Tabular Data - 46.1 KB - 1 Variables, 521 Observations -

Documentation

List of species, pictures and copyright

Coffea_abbayesii_feuille_Madagascar.JPG

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

JPEG Image - 382.2 KB -

Data

Coffea abbayesii (leaves), Madagascar

Coffea_abbayesii-fleur_Madagascar.JPG

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

JPEG Image - 195.2 KB -

Data

Coffea abbayesii (flower), Madagascar

Coffea_abbayesii_fruit_Madagascar.JPG

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

JPEG Image - 429.0 KB -

Data

Coffea abbayesii (fruits), Madagascar

Coffea_abbayesii_fruits2_Madagascar.JPG

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

JPEG Image - 432.8 KB -

Data

Coffea abbayesii (fruits), Madagascar

Coffea_abbayesii_graines_Madagascar.JPG

Mar 10, 2020 - Photo bank for: WCSdb: A database of Wild Coffea Species

JPEG Image - 592.5 KB -

Data

Coffea abbayesii (seeds), Madagascar

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