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Publication Year: 2024

661 to 670 of 939 Results

S3_Genetic_diversity+structure.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 4.3 MB - MD5: 828d31d700d62f10b8f9fbf120f7883a CodeDocumentation In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...
S3_install.packages.R May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) R Syntax - 975 B - MD5: c7a6dda8fc71fd10aebe8212eb9edbdf Code List of packages to install for session 3 on diversity and structure analysis. To be opened with RStudio.
S3_Structure.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 3.8 MB - MD5: f5d2b43e2d5a5eefd051c29b2c68833e Documentation Introduction to Population Genetics for analysing the genetic structure of crops.
S4_Introduction_GenomeWideAssociationStudy_GWAS.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 912.5 KB - MD5: da9c01bfb9ae62fefc2a5b288cc9889d Documentation Introduction to the core concept of genome wide association studies.
S4_script_GWAS_basic_Rcode.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 73.2 KB - MD5: 17bd3bb83031e7349c5d4730581569e8 Documentation This file comments on the R script for GWAS analysis.
S4_Script_GWAS_Introduction.pdf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Adobe PDF - 574.9 KB - MD5: b3bd4b806a6968e50f665cd4e34e832b Documentation This file presents a script for GWAS analysis using R. We used a dataset of pearl millet accessions (Varshney et al. 2017).
sample_metadata.tab May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Tabular Data - 2.5 KB - 5 Variables, 55 Observations - UNF:6:LNg1C4IBq05VUN9bbZDOeQ== Data Table containing the passport data of the pearl millet accessions. This data file is associated with the script "S1_Introduction_to_R_Passport.html". These data are published in Berthouly-Salazar et al. (2016).
SIRAD(UMR PRODIG - CNRS, Univ. Paris 1 Panthéon-Sorbonne, Univ. Paris Diderot, IRD, AgroParisTech) May 14, 2024UMR PRODIG Pour faire face à la vulnérabilité de la capitale péruvienne suite à un séisme, le projet Sirad (Sistema de Información sobre Recursos para la Atención de Desastres en Lima y Callao) a été mené entre avril 2010 et février 2011 par l’équipe Pacivur (Programme andin de formation et...
Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022 May 13, 2024 - UMR IGE Rodrigues Do Amaral, Francisco; Camenen, Benoit; Nguyen, Trung Tin; Tran, Anh Tu; Pellarin, Thierry; Gratiot, Nicolas, 2024, "Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022", https://doi.org/10.23708/KLQMSR, DataSuds, V1, UNF:6:PGOnzXhvk15rYLhlrVTmig== [fileUNF] This dataset is the result of a publication that explores calibration strategies and operational implications of 1D hydrodynamic modeling using the Mage code in the Saigon-Dongnai system in Vietnam. Three calibration approaches for the Mage model are evaluated, and coupling with...
0_ReadMe.txt May 13, 2024 - Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022 Plain Text - 1.5 KB - MD5: 252fed996aee97b36f7db50c9fc0fa83 Documentation Dataset citation, description and terms of use.

S3_Genetic_diversity+structure.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 4.3 MB -

CodeDocumentation

In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...

S3_install.packages.R

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

R Syntax - 975 B -

Code

List of packages to install for session 3 on diversity and structure analysis. To be opened with RStudio.

S3_Structure.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 3.8 MB -

Documentation

Introduction to Population Genetics for analysing the genetic structure of crops.

S4_Introduction_GenomeWideAssociationStudy_GWAS.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 912.5 KB -

Documentation

Introduction to the core concept of genome wide association studies.

S4_script_GWAS_basic_Rcode.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 73.2 KB -

Documentation

This file comments on the R script for GWAS analysis.

S4_Script_GWAS_Introduction.pdf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Adobe PDF - 574.9 KB -

Documentation

This file presents a script for GWAS analysis using R. We used a dataset of pearl millet accessions (Varshney et al. 2017).

sample_metadata.tab

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Tabular Data - 2.5 KB - 5 Variables, 55 Observations -

Data

Table containing the passport data of the pearl millet accessions. This data file is associated with the script "S1_Introduction_to_R_Passport.html". These data are published in Berthouly-Salazar et al. (2016).

SIRAD(UMR PRODIG - CNRS, Univ. Paris 1 Panthéon-Sorbonne, Univ. Paris Diderot, IRD, AgroParisTech)

May 14, 2024UMR PRODIG

Pour faire face à la vulnérabilité de la capitale péruvienne suite à un séisme, le projet Sirad (Sistema de Información sobre Recursos para la Atención de Desastres en Lima y Callao) a été mené entre avril 2010 et février 2011 par l’équipe Pacivur (Programme andin de formation et...

Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022

May 13, 2024 - UMR IGE

Rodrigues Do Amaral, Francisco; Camenen, Benoit; Nguyen, Trung Tin; Tran, Anh Tu; Pellarin, Thierry; Gratiot, Nicolas, 2024, "Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022", https://doi.org/10.23708/KLQMSR, DataSuds, V1, UNF:6:PGOnzXhvk15rYLhlrVTmig== [fileUNF]

This dataset is the result of a publication that explores calibration strategies and operational implications of 1D hydrodynamic modeling using the Mage code in the Saigon-Dongnai system in Vietnam. Three calibration approaches for the Mage model are evaluated, and coupling with...

0_ReadMe.txt

May 13, 2024 - Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022

Plain Text - 1.5 KB -

Documentation

Dataset citation, description and terms of use.

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