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Publication Status: Published

361 to 370 of 8,216 Results

samtools.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 1.1 KB - MD5: c5246bbf7b8f446389b6dd4b2feba108 Code Modules for ViroSeek
spades.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 637 B - MD5: 9c01725862db0c87919a61d210fbea38 Code Modules for ViroSeek
taxonkit.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 585 B - MD5: 1176ab0876dfb3dc42f6349535cec6ca Code Modules for ViroSeek
taxprofiler_db.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 186 B - 4 Variables, 1 Observations - UNF:6:owXJ1TE2Pl/ttHdbzldF6g== Données taxprofiler database input file, companion file of Taxprofiler.sh.
taxprofiler_input.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 828 B - 6 Variables, 5 Observations - UNF:6:K/XMHKnbfbWmNFfjnqG7CA== Données taxprofiler samples input file, companion file of Taxprofiler.sh.
Taxprofiler.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 532 B - MD5: 0b1dba73a89694a8786f937eeffec0e4 Code Taxprofiler command script.
taxprof_ressouces.config Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 103 B - MD5: 653be8d086a3fe012cc314f1778222d6 Code Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.
trimgalore.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 608 B - MD5: b85ebab75a77b0fa51ff011d4e8daf9b Code Modules for ViroSeek
Viroseek_downstream_analysis.Rmd Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing R Notebook - 26.7 KB - MD5: 5388991cf49f2d17c247556d77e1860e Code Rmarkdown for downstream analysis
ViroSeek_input.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 733 B - 3 Variables, 5 Observations - UNF:6:tyuLW2kmYZtk+8pIMV/RPQ== Données ViroSeek samples input file, companion file of Viroseek.sh.

samtools.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 1.1 KB -

Code

Modules for ViroSeek

spades.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 637 B -

Code

Modules for ViroSeek

taxonkit.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 585 B -

Code

Modules for ViroSeek

taxprofiler_db.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 186 B - 4 Variables, 1 Observations -

Données

taxprofiler database input file, companion file of Taxprofiler.sh.

taxprofiler_input.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 828 B - 6 Variables, 5 Observations -

Données

taxprofiler samples input file, companion file of Taxprofiler.sh.

Taxprofiler.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 532 B -

Code

Taxprofiler command script.

taxprof_ressouces.config

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 103 B -

Code

Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.

trimgalore.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 608 B -

Code

Modules for ViroSeek

Viroseek_downstream_analysis.Rmd

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

R Notebook - 26.7 KB -

Code

Rmarkdown for downstream analysis

ViroSeek_input.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 733 B - 3 Variables, 5 Observations -

Données

ViroSeek samples input file, companion file of Viroseek.sh.

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