UMR PHIM

Plant Health Institute of Montpellier

Among the interactions between the plant and its environment (microbial organisms or insects, whether pathogenic or beneficial), the research unit studies those that have an impact on plant health, growth and productivity. The unit is organized in 4 research departments:

Plant-pathogen interactions (ITEM)
Plant-vector-pathogen interactions (VIROM)
Towards an understanding of the phytobiome (PHYTOBIOM)
Understanding epidemics in the field (PRISM)

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51 to 60 of 66 Results

Data_MP_Samples_dataset.tab Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso Tabular Data - 567.4 KB - 32 Variables, 4273 Observations - UNF:6:5UH+qTP6Cy0IFb+8rvCbzQ== DataSurvey All data related to sampled plants and symptoms observed, one row for each maintained sample.
Data_MP_Symptom_Fields_data_dictionary.tab Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso Tabular Data - 7.0 KB - 2 Variables, 44 Observations - UNF:6:9cf8QH3ZSEwDJl38fIgtDw== Documentation Collected symptoms: data dictionary
Data_MP_Symptom_Fields_dataset.tab Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso Tabular Data - 31.3 KB - 45 Variables, 203 Observations - UNF:6:7o3nrlqdR+yjKUsVVLQ8tQ== Data Collected symptom data compiled to derive field-scale data presence/absence data for the major rice diseases studied, with estimated incidences rates expressed as percentages.
PHIM_ xisRNA_ancillaryInputData.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 5.0 MB - MD5: 8f147c6903729a14cfa76cb3237d17c6 Data Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.
PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Plain Text - 46.4 KB - MD5: e5a17d624409c0fd6ecce49ba7f7ab0a Data Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...
PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.0 KB - MD5: e4c59802a37fb02dc0e4ac16e26bdfbb Documentation Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA002_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.9 KB - MD5: ed792730f5aa2ce95321c2c9f7cc7232 Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA002 locus as well as the sequence of the annotated MSU locus transcript in this window.

Data_MP_Samples_dataset.tab

Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso

Tabular Data - 567.4 KB - 32 Variables, 4273 Observations -

DataSurvey

All data related to sampled plants and symptoms observed, one row for each maintained sample.

Data_MP_Symptom_Fields_data_dictionary.tab

Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso

Tabular Data - 7.0 KB - 2 Variables, 44 Observations -

Documentation

Collected symptoms: data dictionary

Data_MP_Symptom_Fields_dataset.tab

Apr 22, 2021 - Spatiotemporal survey of major rice diseases in western Burkina Faso

Tabular Data - 31.3 KB - 45 Variables, 203 Observations -

Data

Collected symptom data compiled to derive field-scale data presence/absence data for the major rice diseases studied, with estimated incidences rates expressed as percentages.

PHIM_ xisRNA_ancillaryInputData.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 5.0 MB -

Data

Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Plain Text - 46.4 KB -

Data

Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.0 KB -

Documentation

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA002_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.9 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA002 locus as well as the sequence of the annotated MSU locus transcript in this window.

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