UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

EVOGEC Team

ADvENS Team

AgroLD

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1 to 10 of 45 Results

GrAnnoT source code and scripts Mar 20, 2025 - GrAnnoT Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2 GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main
Output from the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.
Data used for the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
GrAnnoT data and output(IRD - Institut de Recherche pour le Développement) Feb 26, 2025GrAnnoT This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...
GrAnnoT(IRD - Institut de Recherche pour le Développement) Feb 26, 2025PANEEC Team
Source code for DateBack Feb 24, 2025 - DateBack Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2 Source code for the DatePalm website https://XXXXXXX
Radiocarbon data table for date palm remains for Dateback Feb 20, 2025 - DateBack Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Dateback", https://doi.org/10.23708/C5N9CM, DataSuds, V1 This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...
DateBack(IRD - Institut de Recherche pour le Développement) Feb 20, 2025DYNADIV Team
PANEEC Team(IRD - Institut de Recherche pour le Développement) Feb 20, 2025
France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions Feb 14, 2025 - CERES Team Vadez, Vincent; Bossuet, Jérome; Chehbouni, Abdelghani; Kharrou, Mohamed (hakim); Jacob, Frederic; Mekki, Insaf; Zitouna Chebbi, Rim; Belhouchette, Hatem; Hassenforder, Emeline; Faysse, Nicolas; Hajjarpoor, Amir; Rebolledo, Maria Camila; Cohard, Jean-Martial; Vandervaere, Jean-Pierre; Dolinska, Aleksandra; Sultan, Benjamin, 2021, "France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions", https://doi.org/10.23708/IY0MZY, DataSuds, V4, UNF:6:r1Sk6vJDiM0/k0efcWB/bQ== [fileUNF] Under the new oneCGIAR 2030 strategy, the CGIAR has been undertaking an integrated land-food-water systems research transformation, to deploy sustainable agricultural innovations at a faster rate for smallholder agriculture in the developing countries. France has been supporting...

GrAnnoT source code and scripts

Mar 20, 2025 - GrAnnoT

Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2

GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main

Output from the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.

Data used for the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

GrAnnoT data and output(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025GrAnnoT

This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...

GrAnnoT(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025PANEEC Team

Source code for DateBack

Feb 24, 2025 - DateBack

Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2

Source code for the DatePalm website https://XXXXXXX

Radiocarbon data table for date palm remains for Dateback

Feb 20, 2025 - DateBack

Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Dateback", https://doi.org/10.23708/C5N9CM, DataSuds, V1

This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...

DateBack(IRD - Institut de Recherche pour le Développement)

Feb 20, 2025DYNADIV Team

PANEEC Team(IRD - Institut de Recherche pour le Développement)

Feb 20, 2025

France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions

Feb 14, 2025 - CERES Team

Vadez, Vincent; Bossuet, Jérome; Chehbouni, Abdelghani; Kharrou, Mohamed (hakim); Jacob, Frederic; Mekki, Insaf; Zitouna Chebbi, Rim; Belhouchette, Hatem; Hassenforder, Emeline; Faysse, Nicolas; Hajjarpoor, Amir; Rebolledo, Maria Camila; Cohard, Jean-Martial; Vandervaere, Jean-Pierre; Dolinska, Aleksandra; Sultan, Benjamin, 2021, "France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions", https://doi.org/10.23708/IY0MZY, DataSuds, V4, UNF:6:r1Sk6vJDiM0/k0efcWB/bQ== [fileUNF]

Under the new oneCGIAR 2030 strategy, the CGIAR has been undertaking an integrated land-food-water systems research transformation, to deploy sustainable agricultural innovations at a faster rate for smallholder agriculture in the developing countries. France has been supporting...

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