UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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1 to 10 of 1,029 Results

VCF files from the study of low recombining genomic regions in pearl millet Jun 23, 2025 - DYNADIV Team Salson, Marine; Duranton, Maud; Huynh, Stella; Mariac, Cédric; Tranchant-Dubreuil, Christine; Orjuela, Julie; Cubry,Philippe; Thuillet, Anne-Celine; Burgarella, Concetta; De Navascués, Miguel; Zekraouï, Leïla; Couderc, Marie; Arribat, Sandrine; Rodde, Nathalie; Barnaud, Adeline; Adama Faye; Kane, Ndjido; Vigouroux, Yves; Berthouly-Salazar, Cécile, 2025, "VCF files from the study of low recombining genomic regions in pearl millet", https://doi.org/10.23708/SN2T4A, DataSuds, V1 We conducted a comprehensive investigation of large low-recombining regions in cultivated populations of pearl millet, an outcrossing diploid African cereal. We adopted a population genomic approach based on the analysis of single nucleotide polymorphisms. The repository contains...
ReadMe_SN2T4A.txt Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Plain Text - 2.0 KB - MD5: 8f93a5fcb1e298749d0b547f19f85602 Documentation Contains citation, description and conditions of use of dataset data
Autof-Pod103sr8_scaffolds_assembly.fasta.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 541.6 MB - MD5: c4ae489835bf07b1f4868ccdac0d6cb0 Données Scaffolds of Autof-Pod103sr8
Senegalese_dataset_126_samples_SIFT_prediction.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 49.9 MB - MD5: 3541b006ee85d27bfb4a75356c1d7be1 Données Prediction of the effect of the mutations on protein functions obtained with SIFT.
African_dataset_chr1.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 2.3 GB - MD5: b8ff3c935c4f42b483fe1dbd29b1a75b Données Chromosome 1 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome
African_dataset_chr2.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 2.1 GB - MD5: a416fb338de90a4279d266e5190ff60e Données Chromosome 2 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome
African_dataset_chr3.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 2.5 GB - MD5: 2483c04c141028350a3072d8d243c255 Données Chromosome 3 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome
African_dataset_chr4.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 1.6 GB - MD5: d7cbf49e86ae9b743a49ac6adb296fa3 Données Chromosome 4 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome
African_dataset_chr5.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 1.2 GB - MD5: 71f9d7a9751c4a62181765f11c2b5c87 Données Chromosome 5 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome
African_dataset_chr6.vcf.gz Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet Gzip Archive - 2.2 GB - MD5: 10c0cf6c4b6ba072528cd44c0a72474e Données Chromosome 6 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

VCF files from the study of low recombining genomic regions in pearl millet

Jun 23, 2025 - DYNADIV Team

Salson, Marine; Duranton, Maud; Huynh, Stella; Mariac, Cédric; Tranchant-Dubreuil, Christine; Orjuela, Julie; Cubry,Philippe; Thuillet, Anne-Celine; Burgarella, Concetta; De Navascués, Miguel; Zekraouï, Leïla; Couderc, Marie; Arribat, Sandrine; Rodde, Nathalie; Barnaud, Adeline; Adama Faye; Kane, Ndjido; Vigouroux, Yves; Berthouly-Salazar, Cécile, 2025, "VCF files from the study of low recombining genomic regions in pearl millet", https://doi.org/10.23708/SN2T4A, DataSuds, V1

We conducted a comprehensive investigation of large low-recombining regions in cultivated populations of pearl millet, an outcrossing diploid African cereal. We adopted a population genomic approach based on the analysis of single nucleotide polymorphisms. The repository contains...

ReadMe_SN2T4A.txt

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Plain Text - 2.0 KB -

Documentation

Contains citation, description and conditions of use of dataset data

Autof-Pod103sr8_scaffolds_assembly.fasta.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 541.6 MB -

Données

Scaffolds of Autof-Pod103sr8

Senegalese_dataset_126_samples_SIFT_prediction.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 49.9 MB -

Données

Prediction of the effect of the mutations on protein functions obtained with SIFT.

African_dataset_chr1.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 2.3 GB -

Données

Chromosome 1 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

African_dataset_chr2.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 2.1 GB -

Données

Chromosome 2 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

African_dataset_chr3.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 2.5 GB -

Données

Chromosome 3 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

African_dataset_chr4.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 1.6 GB -

Données

Chromosome 4 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

African_dataset_chr5.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 1.2 GB -

Données

Chromosome 5 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

African_dataset_chr6.vcf.gz

Jun 23, 2025 - VCF files from the study of low recombining genomic regions in pearl millet

Gzip Archive - 2.2 GB -

Données

Chromosome 6 of the VCF file obtained for the African dataset 125 accessions 25,969,513 SNPs for the whole genome

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