UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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1 to 10 of 991 Results

readme_data.txt Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 5.4 KB - MD5: 3754471d5b9f8b8e5bd6739a2cfe643f Documentation Contains a description of all files in this dataset.
O157_H7_EC4115_0a2c271.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 5.4 MB - MD5: cbf164a04f045bcb8b669b1897d56ee0 Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.
O157_H7_EC4115_0a2c271_grannot.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.6 MB - MD5: dc9764aaead09be486297f1466bc4ef7 Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.
O157_H7_EC4115_0a2c271_liftoff.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.3 MB - MD5: c855c9ae86eeec6061576058aa1273bf Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.
S88_fa4fe08.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.9 MB - MD5: 726296987f982677091183f37748ed1a Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.
athaliana_grannot.tar.gz Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Gzip Archive - 244.8 MB - MD5: 1d22e11c2e9b8348811efd77a13bf4cd Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.
grannot_analysis_command_lines.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 8.1 KB - MD5: 6f5be639cf4f13c66772a12e41b711f2 Documentation Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF
readme_outputs.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 4.9 KB - MD5: 55ecaf7ec9b62c3778d5866dfde2d81b Documentation Contains a description of all folders in this dataset.
liftoff_o157h7_to_s88.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 2.9 MB - MD5: 16c7a8c67ec05111e9d9c98e4e4b906a annotation transferred by Liftoff
S88_fa4fe08.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 1.8 MB - MD5: 7ecf8459a73585ee129b054d09b00c20 annotation transferred by GrAnnoT

readme_data.txt

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 5.4 KB -

Documentation

Contains a description of all files in this dataset.

O157_H7_EC4115_0a2c271.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 5.4 MB -

Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.

O157_H7_EC4115_0a2c271_grannot.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.6 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.

O157_H7_EC4115_0a2c271_liftoff.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.3 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.

S88_fa4fe08.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.9 MB -

Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.

athaliana_grannot.tar.gz

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Gzip Archive - 244.8 MB -

Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.

grannot_analysis_command_lines.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 8.1 KB -

Documentation

Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF

readme_outputs.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 4.9 KB -

Documentation

Contains a description of all folders in this dataset.

liftoff_o157h7_to_s88.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 2.9 MB -

annotation transferred by Liftoff

S88_fa4fe08.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 1.8 MB -

annotation transferred by GrAnnoT

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