UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

111 to 120 of 1,153 Results

Data used for the analysis described in GrAnnoT paper Oct 29, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
O157_H7_EC4115_0a2c271.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 5.4 MB - MD5: cbf164a04f045bcb8b669b1897d56ee0 Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.
O157_H7_EC4115_0a2c271_grannot.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.6 MB - MD5: dc9764aaead09be486297f1466bc4ef7 Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.
O157_H7_EC4115_0a2c271_liftoff.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.3 MB - MD5: c855c9ae86eeec6061576058aa1273bf Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.
readme_data.txt Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 5.4 KB - MD5: 3754471d5b9f8b8e5bd6739a2cfe643f Documentation Contains a description of all files in this dataset.
S88_fa4fe08.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.9 MB - MD5: 726296987f982677091183f37748ed1a Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.
Output from the analysis described in GrAnnoT paper Oct 29, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V6 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.
athaliana_grannot.tar.gz Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Gzip Archive - 244.8 MB - MD5: 1d22e11c2e9b8348811efd77a13bf4cd Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.
AzucenaRS1_filter50.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 116.7 MB - MD5: 22cae9b869fc700acb22361127cac2eb Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 50%
AzucenaRS1_filter60.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 116.2 MB - MD5: dfb66d40a2ac500739173c81e744ccc7 Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 60%

Data used for the analysis described in GrAnnoT paper

Oct 29, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

O157_H7_EC4115_0a2c271.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 5.4 MB -

Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.

O157_H7_EC4115_0a2c271_grannot.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.6 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.

O157_H7_EC4115_0a2c271_liftoff.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.3 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.

readme_data.txt

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 5.4 KB -

Documentation

Contains a description of all files in this dataset.

S88_fa4fe08.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.9 MB -

Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.

Output from the analysis described in GrAnnoT paper

Oct 29, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V6

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.

athaliana_grannot.tar.gz

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Gzip Archive - 244.8 MB -

Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.

AzucenaRS1_filter50.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 116.7 MB -

Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 50%

AzucenaRS1_filter60.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 116.2 MB -

Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 60%

Add Data

Share Dataverse

Link Dataverse

Reset Modifications