DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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tree_data_test.png
tree_data_test.png
Mar 6, 2026 - Code source for GraTools v1.1.0
PNG Image - 40.4 KB - MD5: c6c51f5b1db857f14a876a096f2a501d
usecase1_graph_description.rst
Mar 6, 2026 - Code source for GraTools v1.1.0
Unknown - 4.1 KB - MD5: f03b50fbc65d33335f1f80cb26858568
usecase2_subgraph_fasta_extraction.rst
Mar 6, 2026 - Code source for GraTools v1.1.0
Unknown - 5.7 KB - MD5: ce1d11db1bdf498fe991bce82bd53812
usecase3_core_dispensable_groups.rst
Mar 6, 2026 - Code source for GraTools v1.1.0
Unknown - 11.5 KB - MD5: 6776296a620afa02dbf44276ac52c396
usecase4_advanced_pangenome_size.rst
Mar 6, 2026 - Code source for GraTools v1.1.0
Unknown - 5.5 KB - MD5: 9d8ebc8e68f4630c7aeb7a415f5377e6
useful_function.py
Mar 6, 2026 - Code source for GraTools v1.1.0
Python Source Code - 10.1 KB - MD5: 38b1577819a4541c067129a2880140e7
venn_gratools.py
Mar 6, 2026 - Code source for GraTools v1.1.0
Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704
venn_jap_ind_core.png
venn_jap_ind_core.png
Mar 6, 2026 - Code source for GraTools v1.1.0
PNG Image - 95.7 KB - MD5: 7c43397a420dc9dd4eb5d871723198ec
Data used for the analysis described in GrAnnoT paper
Oct 29, 2025 - GrAnnoT data and output
Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6
GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
O157_H7_EC4115_0a2c271.fa
Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper
Unknown - 5.4 MB - MD5: cbf164a04f045bcb8b669b1897d56ee0
Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.
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