UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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161 to 170 of 1,141 Results

AzucenaRS1_filter90.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 113.7 MB - MD5: 849a84800d8a3cea65e146e8ecf4eda5 Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 90%
AzucenaRS1_filter95.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 111.8 MB - MD5: 7224ffc601ff9b6dfd015b5bd77eb1e9 Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 95%
grannot_analysis_command_lines.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 8.1 KB - MD5: 6f5be639cf4f13c66772a12e41b711f2 Documentation Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF
liftoff_o157h7_to_s88.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 2.9 MB - MD5: 16c7a8c67ec05111e9d9c98e4e4b906a annotation transferred by Liftoff
readme_outputs.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 4.9 KB - MD5: 55ecaf7ec9b62c3778d5866dfde2d81b Documentation Contains a description of all folders in this dataset.
S88_fa4fe08.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 1.8 MB - MD5: 7ecf8459a73585ee129b054d09b00c20 annotation transferred by GrAnnoT
climateMetrics_EWEMBI_liebmann_west_africa_1979-2013.nc Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset. Network Common Data Form - 123.6 MB - MD5: 69a3987dbf4cc68d86230068ffeed8cc Données A NetCDF file with climate crop-specific metrics stored for each pixel (resolution 0.5°) located within a defined area covering West Africa.
climatemetrics_mil173Landraces_EWEMBI_Liebmann_1979-1990.tab Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset. Tabular Data - 508.5 KB - 185 Variables, 173 Observations - UNF:6:EdX+/x3auhCXDY0Q7OgZ4g== Données Precipatation, Temperature and radiation crop-specific climate variables computed and extracted from the EWEMBI (V1) dataset, for 173 populations of pearl millet.
Dictionary_cropmetrics.pdf Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset. Adobe PDF - 25.0 KB - MD5: baaa5328ffa5ac93176b65b0d2789aa8 Documentation Dictionary of crop climate metrics
extract_pixels_from_netcdf.py Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset. Python Source Code - 6.7 KB - MD5: bebbb223232f0f478feb8cdcd2685b46 Code A python script that extracts crop-specific metrics from the netCDF file, with a passport file containing geographical coordinates.

AzucenaRS1_filter90.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 113.7 MB -

Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 90%

AzucenaRS1_filter95.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 111.8 MB -

Annotation transfer on AzucenaRS1 with coverage and sequence identity filters at 95%

grannot_analysis_command_lines.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 8.1 KB -

Documentation

Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF

liftoff_o157h7_to_s88.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 2.9 MB -

annotation transferred by Liftoff

readme_outputs.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 4.9 KB -

Documentation

Contains a description of all folders in this dataset.

S88_fa4fe08.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 1.8 MB -

annotation transferred by GrAnnoT

climateMetrics_EWEMBI_liebmann_west_africa_1979-2013.nc

Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset.

Network Common Data Form - 123.6 MB -

Données

A NetCDF file with climate crop-specific metrics stored for each pixel (resolution 0.5°) located within a defined area covering West Africa.

climatemetrics_mil173Landraces_EWEMBI_Liebmann_1979-1990.tab

Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset.

Tabular Data - 508.5 KB - 185 Variables, 173 Observations -

Données

Precipatation, Temperature and radiation crop-specific climate variables computed and extracted from the EWEMBI (V1) dataset, for 173 populations of pearl millet.

Dictionary_cropmetrics.pdf

Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset.

Adobe PDF - 25.0 KB -

Documentation

Dictionary of crop climate metrics

extract_pixels_from_netcdf.py

Sep 17, 2025 - Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset.

Python Source Code - 6.7 KB -

Code

A python script that extracts crop-specific metrics from the netCDF file, with a passport file containing geographical coordinates.

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