UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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11 to 20 of 72 Results

Supplementary command lines for the GraNPA paper Jul 30, 2026 - GraNPA other codes used for the manuscript Carrette, Camille; Muller, Cédric, 2026, "Supplementary command lines for the GraNPA paper", https://doi.org/10.23708/AU5ALD, DataSuds, V1 This file contains all the commands used for generate data and results in the GranPA paper
GraNPA other codes used for the manuscript(IRD - Institut de Recherche pour le Développement) Jul 30, 2026GranPA
GranPa source code, v1 Jul 30, 2026 - GranPa Source Code Carrette, Camille; Muller, Cédric, 2026, "GranPa source code, v1", https://doi.org/10.23708/JG96WP, DataSuds, V1 This code is the version used in the GranPa paper
GranPa Source Code(IRD - Institut de Recherche pour le Développement) Jul 30, 2026GranPA
GranPA(IRD - Institut de Recherche pour le Développement) Jul 30, 2026PANEEC Team This dataverse contains the data, codes and command lines used for the GranPA v1 article
SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food Jul 9, 2026 - DYNADIV Team Davy, Martin; Barnaud, Adeline; Berthouly-Salazar, Cecile; Renard Delphine; Thuillet, Anne-Celine, 2026, "SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food", https://doi.org/10.23708/LK5VUI, DataSuds, V1, UNF:6:mNCUB06Fnpj7NbK+SblAGA== [fileUNF] Across the vast diversity of vascular plants on Earth, around 6,000 species have been used as food sources for humans. Yet, only nine crops provide more than 60% of the calories consumed worldwide. In the face of accelerating climate change, biodiversity loss, and malnutrition, t...
Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
Data used in the gratools paper Mar 6, 2026 - gratools Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1 These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.
Code source for GraTools v1.1.0 Mar 6, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1 This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch
gratools(IRD - Institut de Recherche pour le Développement) Mar 6, 2026PANEEC Team This dataverse contains codes and data related to the GraTools software

Supplementary command lines for the GraNPA paper

Jul 30, 2026 - GraNPA other codes used for the manuscript

Carrette, Camille; Muller, Cédric, 2026, "Supplementary command lines for the GraNPA paper", https://doi.org/10.23708/AU5ALD, DataSuds, V1

This file contains all the commands used for generate data and results in the GranPA paper

GraNPA other codes used for the manuscript(IRD - Institut de Recherche pour le Développement)

Jul 30, 2026GranPA

GranPa source code, v1

Jul 30, 2026 - GranPa Source Code

Carrette, Camille; Muller, Cédric, 2026, "GranPa source code, v1", https://doi.org/10.23708/JG96WP, DataSuds, V1

This code is the version used in the GranPa paper

GranPa Source Code(IRD - Institut de Recherche pour le Développement)

Jul 30, 2026GranPA

GranPA(IRD - Institut de Recherche pour le Développement)

Jul 30, 2026PANEEC Team

This dataverse contains the data, codes and command lines used for the GranPA v1 article

SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food

Jul 9, 2026 - DYNADIV Team

Davy, Martin; Barnaud, Adeline; Berthouly-Salazar, Cecile; Renard Delphine; Thuillet, Anne-Celine, 2026, "SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food", https://doi.org/10.23708/LK5VUI, DataSuds, V1, UNF:6:mNCUB06Fnpj7NbK+SblAGA== [fileUNF]

Across the vast diversity of vascular plants on Earth, around 6,000 species have been used as food sources for humans. Yet, only nine crops provide more than 60% of the calories consumed worldwide. In the face of accelerating climate change, biodiversity loss, and malnutrition, t...

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

Data used in the gratools paper

Mar 6, 2026 - gratools

Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1

These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.

Code source for GraTools v1.1.0

Mar 6, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1

This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch

gratools(IRD - Institut de Recherche pour le Développement)

Mar 6, 2026PANEEC Team

This dataverse contains codes and data related to the GraTools software

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