UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

191 to 200 of 1,141 Results

AzucenaRS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: d0ea8095b034432d92d46f9a2eb9402d Data File produced by Liftoff during annotation transfer.
AzucenaRS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: b98afd5ec89d221a537add6e276b31cf Data File produced by Liftoff during annotation transfer.
grannot.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 442.1 MB - MD5: 97e34b55bea7b31ca0047afcd1ceb41e Data Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.
graphaligner_rice_transfer.gaf Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 466.8 MB - MD5: fc73c04183cf27f2eb5878f6eb4caf55 Data Result of the GraphAligner alignment of Nipponbare features on the graph.
GRCh38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 96.1 MB - MD5: 0f9debe9433625ca59709513e6d9edaf Data Result of the human Chr1 annotation transfer by GrAnnoT
IRGSP.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 125.9 MB - MD5: 7d668cc43cd5f8b53beeb6d3b14c49a8 Data Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.
IRGSP.gff3 Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 94.1 MB - MD5: 3915d5c78227d058a36a871a992c4f5d Data Result of the second transfer by Liftoff for the back and forth comparison with GrAnnoT.
liftoff_transfer_chm13_to_grch38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 160.9 MB - MD5: a944747959786332e338b42bce913de8 Data Result of the human Chr1 annotation transfer by Liftoff
odgi_transfer_nb_azu.bed Mar 10, 2025 - Output from the analysis described in GrAnnoT paper PLINK Binary - 187.8 MB - MD5: 8070e80fde5899d58b0ec16189b488a8 Data Result of the ODGI transfer between Nipponbare and AzucenaRS1 through the pangenome graph.
Os117425RS1.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 113.3 MB - MD5: 76e7db440455ca21bed9758664eb69f5 Data Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).

AzucenaRS1_named_unmappeddb.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

AzucenaRS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

grannot.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 442.1 MB -

Data

Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.

graphaligner_rice_transfer.gaf

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 466.8 MB -

Data

Result of the GraphAligner alignment of Nipponbare features on the graph.

GRCh38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 96.1 MB -

Data

Result of the human Chr1 annotation transfer by GrAnnoT

IRGSP.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 125.9 MB -

Data

Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.

IRGSP.gff3

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 94.1 MB -

Data

Result of the second transfer by Liftoff for the back and forth comparison with GrAnnoT.

liftoff_transfer_chm13_to_grch38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 160.9 MB -

Data

Result of the human Chr1 annotation transfer by Liftoff

odgi_transfer_nb_azu.bed

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

PLINK Binary - 187.8 MB -

Data

Result of the ODGI transfer between Nipponbare and AzucenaRS1 through the pangenome graph.

Os117425RS1.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 113.3 MB -

Data

Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).

Add Data

Share Dataverse

Link Dataverse

Reset Modifications