DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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221 to 230 of 1,369 Results
gratools_rice_analysis_commands.md
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327
Documentation
This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
gratools_stats_white.png
gratools_stats_white.png
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
PNG Image - 370.3 KB - MD5: e8eeed32f3adcea3d7e0cd1e6f805e96
Documentation
Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
print_venn_gratools.R
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
README
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Plain Text - 2.1 KB - MD5: 24b9cee6403fbab6f7d945cdee151346
Documentation
contains information describing each script available in this repository
script_jap_ind.sh
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Shell Script - 1.0 KB - MD5: a52ca15e3c8d29b76e4828439be17001
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
supporting_data_README.txt
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Plain Text - 375 B - MD5: 0102ef91632371fc7f58d2a6ff2bcbd9
Documentation
describes the contents of the repository
venn_gratools.py
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
Data used in the gratools paper
Mar 6, 2026 - gratools
Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1
These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.
ZenodoLinks.txt
Mar 6, 2026 - Data used in the gratools paper
Plain Text - 24 B - MD5: 1446b67cc3a41151413b63dc00dfccfa
This is the Zenodo DOI for graphs from Bathycoccus, 20 arabidopsis and 69 arabidopsis
Code source for GraTools v1.1.0
Code source for GraTools v1.1.0
Mar 6, 2026 - gratools
Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1
This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch
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