UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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251 to 260 of 1,141 Results

OsIR64RS1_named.db.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 111.6 MB - MD5: e189c1186c1941935d03ed46896f5cfe Data Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.
OsIR64RS1_named.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 111.5 MB - MD5: 2c167f36918538570d95f724ce8c0e99 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP).
OsIR64RS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 51.4 KB - MD5: 8dbac09fdbd22c7f6960e1261533b583 Data File produced by Liftoff during annotation transfer.
OsIR64RS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 51.4 KB - MD5: 3e243d763300e956e9e7b10cd36445e0 Data File produced by Liftoff during annotation transfer.
PAV_matrix.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 2.1 MB - MD5: a67aa4c80fb648e2586beff20acc3b3f Data PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.
reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 229.8 MB - MD5: 40ebe8ac4299a91fbcc080e0a35e725e Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
reference_all_to_target_all.sam Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 250.2 MB - MD5: da6adfa01f20e09d1f881ecf62d8ca71 Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
vg_annotation_files.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 409.4 MB - MD5: 6c74d159afe87099e500fcdf2fc6180a Data Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.
add_features_to_graph.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 1.5 KB - MD5: c15f2b3d1f3c6aedd9b04f773f38f9fc Code

OsIR64RS1_named.db.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 111.6 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.

OsIR64RS1_named.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 111.5 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP).

OsIR64RS1_named_unmappeddb.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 51.4 KB -

Data

File produced by Liftoff during annotation transfer.

OsIR64RS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 51.4 KB -

Data

File produced by Liftoff during annotation transfer.

PAV_matrix.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 2.1 MB -

Data

PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 229.8 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

reference_all_to_target_all.sam

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 250.2 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

vg_annotation_files.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 409.4 MB -

Data

Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.

add_features_to_graph.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 1.5 KB -

Code

Add Data

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