DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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21 to 30 of 45 Results
2.3-beta1 version of TrEMOLO
Oct 10, 2023 - TrEMOLO software - Data and codes
MOHAMED, Mourdas, 2023, "2.3-beta1 version of TrEMOLO", https://doi.org/10.23708/IEL4HY, DataSuds, V1
New version of TrEMOLO
Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds
Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds
Sep 27, 2023 - DYNADIV Team
Kaczmarek, Thomas; Van der Veen, Marijke; Ivorra, Sarah; Mattingly, David; Terral, Jean-Frederic; Gros-Balthazard, Muriel, 2023, "Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds", https://doi.org/10.23708/D3WASI, DataSuds, V1, UNF:6:Z02ean4vSayKRRTZjiasPw== [fileUNF]
The development of oasis agriculture is a turning point for humans in North Africa and West Asia. The date palm (Phoenix dactylifera L.), is one of the most critical species in these agroecosystems. It was domesticated in the Gulf region over 6,000 years ago and later spread to o...
Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data
Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data
Jul 12, 2023 - DYNADIV Team
Kaczmarek, Thomas; Causse, Sandrine; Abdul, Suleiman Dangana; Abraham, Solomon; Achigan-Dako, Enoch G.; Adje, Charlotte; Adjebeng-Danquah, Joseph; Agyare, Richard Y.; Akanvou, Louise; Bakasso, Yacoubou; Barry, Mamadou B.; Bonsu, Samuel K.; Calatayud, Caroline; Conde, Soukeye; Couderc, Marie; Dachi, Stephen N.; Diallo, T; Diop, Baye M.; Deu, Monique; Gueye, Mame C.; Ibrahim Bio Yerima, Abdou R.; Issah, Abdul R; Kane, Ndjido Ardo; Kombiok, James M.; Ngom, Ablaye; Noyer, Jean-Louis; Olodo, Katina; Oselebe, Happiness O.; Pham, Jean-Louis; Picquet, Marie; Puozaa, Doris K.; Rivallan, Ronan; Saidou, Sani; Sekloka, Emmanuel; Tengey, Theophilus K.; Uyoh, Edak; Vancoppenolle, Sylvie; Vigouroux, Yves; Zekraoui, Leila; Leclerc, Christian; Barnaud, Adeline; Billot, Claire, 2023, "Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data", https://doi.org/10.23708/TX5DE2, DataSuds, V1, UNF:6:3fJ9FCQhz8EPtGubWUVcZA== [fileUNF]
Neglected and under-utilized species represent important genetic resources and untapped reservoirs of diversity to address global food and nutrition challenges. Characterizing the extent of their genetic diversity and making it available is of prime importance to their wider use...
Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis
Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis
May 24, 2023 - DYNADIV Team
Silva, Alexander; Montoya, María Elker; Quintero, Constanza; Cuasquer, Juan; Tohme, Joe; Graterol, Eduardo; Cruz, Maribel; Lorieux, Mathias, 2023, "Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis", https://doi.org/10.23708/EERVFW, DataSuds, V1, UNF:6:0DU/A3JpDpAzWfzkjq7pXA== [fileUNF]
These data can be used to search for quantitative trait loci (QTLs) for resistance to the Rice hoja blanca disease: - Genotypic matrices of single nucleotide polymorphism (SNP) data in four independent F2, F3 segregating populations of rice (Oryza sativa L.) derived from resistan...
Caiapo genome
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "Caiapo genome", https://doi.org/10.23708/QMM2WH, DataSuds, V1
This data are the draft genome assembly of Caiapo and its annotation transferred from IRGSP1.0/Nipponbare reference genome. Caiapo is a Oryza sativa variety involved in some CSSL crosses (2023-04-21)
MG12 data
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "MG12 data", https://doi.org/10.23708/1JST4X, DataSuds, V1
This data are the draft genome assembly of MG12 ans its annotation transfered from IRGSP1.0/Nipponbare ference genome. MG12 is a Oryza glaberrima variety involved in some CSSL crosses
OryzaGenomeData(IRD - Institut de Recherche pour le Développement)
Apr 21, 2023
Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation
Dec 19, 2022 - DYNADIV Team
Cisse, Aby; Clermont-Dauphin, Cathy; Sall, Saidou Nourou; Ndir, Khadidiatou; Kane, Ndjido Ardo; Renard, Delphine; Violle, Cyrille; Barnaud, Adeline; Berthouly-Salazar, Cecile, 2022, "Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation", https://doi.org/10.23708/SVJS1T, DataSuds, V1, UNF:6:jEDyzHjdv0cMJIPXU7rROw== [fileUNF]
This study was co-designed with farmers’ organizations in Senegal with the aim of assessing the impacts of the mixing of early- and late-flowering pearl millet landraces (Cenchrus americanus) on in situ yield, i.e. in poor soil conditions with limited fertilization on smallholder...
v2.2-beta1 version used for the publication data of TrEMOLO
Dec 19, 2022 - TrEMOLO software - Data and codes
SABOT, Francois; MOHAMED, Mourdas, 2022, "v2.2-beta1 version used for the publication data of TrEMOLO", https://doi.org/10.23708/2FYBUL, DataSuds, V2
This dataset is the locked software version used for the publication of TrEMOLO. It represents the v2.2-beta1 version
Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper
Dec 19, 2022 - TrEMOLO software - Data and codes
SABOT, Francois; MOHAMED, Mourdas, 2022, "Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper", https://doi.org/10.23708/N447VS, DataSuds, V1
This dataset contains the simulated reads used to validate TrEMOLO. The reads were created using DeeepSimulator v1.5 (https://github.com/liyu95/DeepSimulator/releases/tag/v1.5) using the options -B 2 -K n -l 20000.
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