DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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291 to 300 of 1,043 Results
GWAS_ion21_ETM.txt
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Plain Text - 72.7 KB - MD5: 8a9db23d2434d4fac37797ef0783b460
Data
Input file for GWAS on the dataset obtained in 2021 (contain BLUEs and residues following a Gaussian law)
GWAS_ion22_ETM.txt
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Plain Text - 56.9 KB - MD5: ed1f643c63a4b96e9bd3bc873a56a1c2
Data
Input file for GWAS on the dataset obtained in 2022 (contain BLUEs and residues following a Gaussian law)
In_PRUNE.prune.in
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Plain Text - 1.9 MB - MD5: 7c56cb8d09822cb707f57237ff14dac3
Data
List of SNPs that are independent
IonoMil_2021_Raw_Data.tab
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Tabular Data - 292 B - 2 Variables, 4 Observations - UNF:6:kQqY9krIhjhHel4jvtuOag==
Data
Raw data of ion content in leaf in pearl millet
IonoMil_2022_Raw_Data.tab
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Tabular Data - 292 B - 2 Variables, 4 Observations - UNF:6:JIyi0lCYwZZexIXMR0Bn5A==
Data
Raw data of ion content in leaf in pearl millet
IonoMil_DataverseIRD_References.docx
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
MS Word - 15.8 KB - MD5: dabb710bd8e7887d40d12df2370f8fb4
Documentation
PearlMillet.all.snps_maf0.05_miss0.5.vcf
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
text/vcard - 637.7 MB - MD5: 2e19a54384d3913873558ad6f833d9ff
Data
Filtered SNPs from GBS genotyping (file used for pruning)
Pearl_Millet_IonoMil_Data_Dictionary.tab
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Tabular Data - 1.2 KB - 3 Variables, 44 Observations - UNF:6:6gtf1TyKWj5epK5wWgpcUQ==
Documentation
Data dictionary
Pearl_millet_IonoMil_ReadMe.txt
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Plain Text - 5.5 KB - MD5: e056720a5486b5f6dc4d394025c36b98
Documentation
Dataset citation, description and terms of use
Pruning_script.txt
Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)
Plain Text - 792 B - MD5: 58731d81bc0bf19bf2291cdaef04f070
Code
R script used to remove non-independent SNPs from the vcf
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