31 to 40 of 52 Results
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "Caiapo genome", https://doi.org/10.23708/QMM2WH, DataSuds, V1
This data are the draft genome assembly of Caiapo and its annotation transferred from IRGSP1.0/Nipponbare reference genome. Caiapo is a Oryza sativa variety involved in some CSSL crosses (2023-04-21) |
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "MG12 data", https://doi.org/10.23708/1JST4X, DataSuds, V1
This data are the draft genome assembly of MG12 ans its annotation transfered from IRGSP1.0/Nipponbare ference genome. MG12 is a Oryza glaberrima variety involved in some CSSL crosses |
Apr 21, 2023
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Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data and code for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V3, UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== [fileUNF]
We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14... |
Dec 19, 2022 - DYNADIV Team
Cisse, Aby; Clermont-Dauphin, Cathy; Sall, Saidou Nourou; Ndir, Khadidiatou; Kane, Ndjido Ardo; Renard, Delphine; Violle, Cyrille; Barnaud, Adeline; Berthouly-Salazar, Cecile, 2022, "Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation", https://doi.org/10.23708/SVJS1T, DataSuds, V1, UNF:6:jEDyzHjdv0cMJIPXU7rROw== [fileUNF]
This study was co-designed with farmers’ organizations in Senegal with the aim of assessing the impacts of the mixing of early- and late-flowering pearl millet landraces (Cenchrus americanus) on in situ yield, i.e. in poor soil conditions with limited fertilization on smallholder... |
Dec 19, 2022 - TrEMOLO software - Data and codes
SABOT, Francois; MOHAMED, Mourdas, 2022, "v2.2-beta1 version used for the publication data of TrEMOLO", https://doi.org/10.23708/2FYBUL, DataSuds, V2
This dataset is the locked software version used for the publication of TrEMOLO. It represents the v2.2-beta1 version |
Dec 19, 2022 - TrEMOLO software - Data and codes
SABOT, Francois; MOHAMED, Mourdas, 2022, "Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper", https://doi.org/10.23708/N447VS, DataSuds, V1
This dataset contains the simulated reads used to validate TrEMOLO. The reads were created using DeeepSimulator v1.5 (https://github.com/liyu95/DeepSimulator/releases/tag/v1.5) using the options -B 2 -K n -l 20000. |
Dec 16, 2022 - TrEMOLO software - Data and codes
SABOT, Francois; MOHAMED, Mourdas, 2022, "Simulated genome sequences for replication control for TrEMOLO", https://doi.org/10.23708/DSDTZ0, DataSuds, V1
This dataset contains the simulated genomes based on the G0-F100 initial sequence including the INSIDERs and OUTSIDERs simulated insertions. |
TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO... |
Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF]
This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l... |
