UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

EVOGEC Team

ADvENS Team

AgroLD

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31 to 40 of 962 Results

AzucenaRS1_named.db.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 114.1 MB - MD5: 17348ce21f9a1fcf73365431548f69d6 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.
AzucenaRS1_named.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 114.1 MB - MD5: 804c4e143ab2d03d5d64e5e84a14de73 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP).
AzucenaRS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: d0ea8095b034432d92d46f9a2eb9402d Data File produced by Liftoff during annotation transfer.
AzucenaRS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: b98afd5ec89d221a537add6e276b31cf Data File produced by Liftoff during annotation transfer.
grannot_analysis_command_lines.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 7.8 KB - MD5: bf5ed4bfaf8c46dd4067ca1c4cd5967b Documentation Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF
grannot.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 442.1 MB - MD5: 97e34b55bea7b31ca0047afcd1ceb41e Data Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.
graphaligner_rice_transfer.gaf Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 466.8 MB - MD5: fc73c04183cf27f2eb5878f6eb4caf55 Data Result of the GraphAligner alignment of Nipponbare features on the graph.
GRCh38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 96.1 MB - MD5: 0f9debe9433625ca59709513e6d9edaf Data Result of the human Chr1 annotation transfer by GrAnnoT
IRGSP.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 125.9 MB - MD5: 7d668cc43cd5f8b53beeb6d3b14c49a8 Data Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.
IRGSP.gff3 Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 94.1 MB - MD5: 3915d5c78227d058a36a871a992c4f5d Data Result of the second transfer by Liftoff for the back and forth comparison with GrAnnoT.

AzucenaRS1_named.db.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 114.1 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.

AzucenaRS1_named.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 114.1 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP).

AzucenaRS1_named_unmappeddb.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

AzucenaRS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

grannot_analysis_command_lines.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 7.8 KB -

Documentation

Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF

grannot.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 442.1 MB -

Data

Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.

graphaligner_rice_transfer.gaf

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 466.8 MB -

Data

Result of the GraphAligner alignment of Nipponbare features on the graph.

GRCh38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 96.1 MB -

Data

Result of the human Chr1 annotation transfer by GrAnnoT

IRGSP.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 125.9 MB -

Data

Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.

IRGSP.gff3

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 94.1 MB -

Data

Result of the second transfer by Liftoff for the back and forth comparison with GrAnnoT.

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