UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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401 to 410 of 1,032 Results

RHB_QTL_data.tab May 24, 2023 - Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis Tabular Data - 167.7 KB - 106 Variables, 371 Observations - UNF:6:0DU/A3JpDpAzWfzkjq7pXA== DataMetadata Excel workbook containing 4 sheets (individual populations), plus one sheet (four populations combined). When downloading, select option "MS Excel - Original File Format".
Caiapo genome Apr 21, 2023 - OryzaGenomeData SABOT, Francois, 2023, "Caiapo genome", https://doi.org/10.23708/QMM2WH, DataSuds, V1 This data are the draft genome assembly of Caiapo and its annotation transferred from IRGSP1.0/Nipponbare reference genome. Caiapo is a Oryza sativa variety involved in some CSSL crosses (2023-04-21)
AnnotRAPdb-Caiapo_FlyeMedakaRagtag.gff3 Apr 21, 2023 - Caiapo genome text/gff3 - 111.5 MB - MD5: fd0b2cd31c233d812a6f5df72b895170
Caiapo_FlyeMedakaRagtag.fasta Apr 21, 2023 - Caiapo genome Unknown - 362.9 MB - MD5: 7daae958c8cd6a397a7bac33ff976867
MG12 data Apr 21, 2023 - OryzaGenomeData SABOT, Francois, 2023, "MG12 data", https://doi.org/10.23708/1JST4X, DataSuds, V1 This data are the draft genome assembly of MG12 ans its annotation transfered from IRGSP1.0/Nipponbare ference genome. MG12 is a Oryza glaberrima variety involved in some CSSL crosses
AnnotOg132Mg12PrFinal.gff3 Apr 21, 2023 - MG12 data text/gff3 - 11.2 MB - MD5: 62ccdc3eda6213e40aae00a6331e3232 Annotation transferred from RapDB
Og132LD_FlyeMedakaRagtagNiponBarre.fasta Apr 21, 2023 - MG12 data Unknown - 333.5 MB - MD5: 11d4f832afd65a61dc21e0196251ff28 Genome sequence
Supporting data and code for the African Rice Panreference produced by the frangiPANe software Jan 27, 2023 - DYNADIV Team Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data and code for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V3, UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== [fileUNF] We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14...
africanRice_nrctgs_readme.txt Jan 27, 2023 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Plain Text - 1.8 KB - MD5: 73de2fe097cfc2f4e5d5495f4dd1d765 Documentation Dataset citation, description and contents summary
frangiPANe-code-v1.zip Jan 27, 2023 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software ZIP Archive - 1.6 MB - MD5: e1e2f64eaf0d3b9aa16dd6b745fde5ff Code frangiPANe source code, v1 (26-01-2023) - Jupyter Notebook application

RHB_QTL_data.tab

May 24, 2023 - Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis

Tabular Data - 167.7 KB - 106 Variables, 371 Observations -

DataMetadata

Excel workbook containing 4 sheets (individual populations), plus one sheet (four populations combined). When downloading, select option "MS Excel - Original File Format".

Caiapo genome

Apr 21, 2023 - OryzaGenomeData

SABOT, Francois, 2023, "Caiapo genome", https://doi.org/10.23708/QMM2WH, DataSuds, V1

This data are the draft genome assembly of Caiapo and its annotation transferred from IRGSP1.0/Nipponbare reference genome. Caiapo is a Oryza sativa variety involved in some CSSL crosses (2023-04-21)

AnnotRAPdb-Caiapo_FlyeMedakaRagtag.gff3

Apr 21, 2023 - Caiapo genome

text/gff3 - 111.5 MB -

Caiapo_FlyeMedakaRagtag.fasta

Apr 21, 2023 - Caiapo genome

Unknown - 362.9 MB -

MG12 data

Apr 21, 2023 - OryzaGenomeData

SABOT, Francois, 2023, "MG12 data", https://doi.org/10.23708/1JST4X, DataSuds, V1

This data are the draft genome assembly of MG12 ans its annotation transfered from IRGSP1.0/Nipponbare ference genome. MG12 is a Oryza glaberrima variety involved in some CSSL crosses

AnnotOg132Mg12PrFinal.gff3

Apr 21, 2023 - MG12 data

text/gff3 - 11.2 MB -

Annotation transferred from RapDB

Og132LD_FlyeMedakaRagtagNiponBarre.fasta

Apr 21, 2023 - MG12 data

Unknown - 333.5 MB -

Genome sequence

Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Jan 27, 2023 - DYNADIV Team

Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data and code for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V3, UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== [fileUNF]

We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14...

africanRice_nrctgs_readme.txt

Jan 27, 2023 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Plain Text - 1.8 KB -

Documentation

Dataset citation, description and contents summary

frangiPANe-code-v1.zip

Jan 27, 2023 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

ZIP Archive - 1.6 MB -

Code

frangiPANe source code, v1 (26-01-2023) - Jupyter Notebook application

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