UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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411 to 420 of 991 Results

Quercus_ilex_Tunisia_Info_legend.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:zDhm9+7gJOY1s3qihtdE4g== Documentation Description of the variables used
Quercus_ilex_Tunisia_Measured_data.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 8.7 KB - 57 Variables, 18 Observations - UNF:6:I8n0JHgQrbagPQ/J0DWPJw== DataGeospatial Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied
Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 38.4 KB - 8 Variables, 276 Observations - UNF:6:f5I6b7NXtJQ9UamqOw9VPQ== DataGeospatial Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia
culebrONT-2.1.1.tar.gz Aug 18, 2022 - Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes Gzip Archive - 829.1 KB - MD5: c9d6c534f6cbdcb0de33a79b1a1a51c0 Code Source code of culebrONT pipeline stable version 2.1.1
CulebrONT_Data-Xoo-sub.zip Aug 18, 2022 - Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes ZIP Archive - 314.2 MB - MD5: c1d4d4fb38546ad3e07c34c25203ab73 Data Dataset used to test CulebrONT code
CulebrONT_PCJ_supplemental.pdf Aug 18, 2022 - Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes Adobe PDF - 1.1 MB - MD5: 491db3bc9c1d44f16d9eb0a4ce2f4c43 Documentation Supplementary information related to CulebrONT pipeline implementation
CulebrONT_REPORT_Data-Xoo-sub.zip Aug 18, 2022 - Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes ZIP Archive - 27.0 MB - MD5: 063d9231f2ccd8e571191ab2c2ef503d DataDocumentation Final report generated by CulebrONT software using the test dataset Data-Xoo-sub.zip
CulebrONT_REPORTS.zip Aug 18, 2022 - Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes ZIP Archive - 813.6 MB - MD5: 595aa262a2ffcd91fb88d785cd3fa4dc DataDocumentation Reports generated by the CulebrONT software with data from different organisms (rice, nematoda, bacteria) as described in the PCJ manuscript
InpactorDB_non-redundant_V2.format.fasta Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning Unknown - 564.5 MB - MD5: e7d6bb2820ebf82252f7f39a4f583641 Data Fasta file for InpactorDB V2. NON-redundant database of LTR retrotransposons.
InpactorDB_redundant_V2_format.fasta.zip Feb 1, 2021 - Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning ZIP Archive - 292.5 MB - MD5: 9f7291811eedd0b03d410035f24ae59c Data Fasta file for InpactorDB V2. Redundant database of LTR retrotransposons.

Quercus_ilex_Tunisia_Info_legend.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

Documentation

Description of the variables used

Quercus_ilex_Tunisia_Measured_data.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 8.7 KB - 57 Variables, 18 Observations -

DataGeospatial

Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied

Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 38.4 KB - 8 Variables, 276 Observations -

DataGeospatial

Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia

culebrONT-2.1.1.tar.gz

Aug 18, 2022 - Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Gzip Archive - 829.1 KB -

Code

Source code of culebrONT pipeline stable version 2.1.1

CulebrONT_Data-Xoo-sub.zip

Aug 18, 2022 - Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes