UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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411 to 420 of 1,002 Results

TrEMOLO software - Data and codes Dec 16, 2022 TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...
africanRice_nrctgs_V1.fasta Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Unknown - 504.0 MB - MD5: 9d5d44f42a84c20758347c6b96246c01 Data Fasta file of the new sequences absent from the reference
africanRice_nrctgs_V1_placedOnGenome.tab Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Tabular Data - 4.6 MB - 4 Variables, 152411 Observations - UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== Data CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.
Data_Quercus_ilex_Tunisia_2020.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:6XhPE2A3ZC/WxUlI4UcuXg== DataDocumentation This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...
Quercus_ilex_Tunisia_Analyzed_data1.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.3 KB - 21 Variables, 24 Observations - UNF:6:/Diz8kQoyF9eN1vDG3xYQw== Data Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest
Quercus_ilex_Tunisia_Analyzed_data2.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 5.8 KB - 26 Variables, 24 Observations - UNF:6:GHF/3/NjGglg2I7s4uK4DA== Data Cross-correlation matrix between seed morphophysiological traits
Quercus_ilex_Tunisia_Info_legend.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:zDhm9+7gJOY1s3qihtdE4g== Documentation Description of the variables used
Quercus_ilex_Tunisia_Measured_data.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 8.7 KB - 57 Variables, 18 Observations - UNF:6:I8n0JHgQrbagPQ/J0DWPJw== DataGeospatial Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied
Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 38.4 KB - 8 Variables, 276 Observations - UNF:6:f5I6b7NXtJQ9UamqOw9VPQ== DataGeospatial Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia
ADvENS Team(UMR DIADE) Sep 9, 2022 ADvENS Team The ADvENS team performs integrative analyses of the diversity and environmental adaptation of tropical and Mediterranean trees. In particular, the team aims to better understand the evolution of genomes, transcriptomes and metabolisms associated with local adaptation...

TrEMOLO software - Data and codes

Dec 16, 2022

TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...

africanRice_nrctgs_V1.fasta

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Unknown - 504.0 MB -

Data

Fasta file of the new sequences absent from the reference

africanRice_nrctgs_V1_placedOnGenome.tab

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Tabular Data - 4.6 MB - 4 Variables, 152411 Observations -

Data

CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

Data_Quercus_ilex_Tunisia_2020.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

DataDocumentation

This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...

Quercus_ilex_Tunisia_Analyzed_data1.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.3 KB - 21 Variables, 24 Observations -

Data

Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest

Quercus_ilex_Tunisia_Analyzed_data2.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 5.8 KB - 26 Variables, 24 Observations -

Data

Cross-correlation matrix between seed morphophysiological traits

Quercus_ilex_Tunisia_Info_legend.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

Documentation

Description of the variables used

Quercus_ilex_Tunisia_Measured_data.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 8.7 KB - 57 Variables, 18 Observations -

DataGeospatial

Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied

Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 38.4 KB - 8 Variables, 276 Observations -

DataGeospatial

Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia

ADvENS Team(UMR DIADE)

Sep 9, 2022

ADvENS Team The ADvENS team performs integrative analyses of the diversity and environmental adaptation of tropical and Mediterranean trees. In particular, the team aims to better understand the evolution of genomes, transcriptomes and metabolisms associated with local adaptation...

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