UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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431 to 440 of 1,032 Results

DIVAGRO_soil_measures.tab Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation Tabular Data - 1.4 KB - 1 Variables, 30 Observations - UNF:6:934e90kSsr/w67IBQ4eeFg== Data Soil measures for the two villages: NO3,NH4,N,C,C/N,P and pH
DIVAGRO_traits_perlandrace_perunit.tab Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation Tabular Data - 32.9 KB - 1 Variables, 225 Observations - UNF:6:lGEnoGrgCkL1cTX9nVuCSA== Data 14 traits measured for each landrace per repetition
v2.2-beta1 version used for the publication data of TrEMOLO Dec 19, 2022 - TrEMOLO software - Data and codes SABOT, Francois; MOHAMED, Mourdas, 2022, "v2.2-beta1 version used for the publication data of TrEMOLO", https://doi.org/10.23708/2FYBUL, DataSuds, V2 This dataset is the locked software version used for the publication of TrEMOLO. It represents the v2.2-beta1 version
README-TrEMOLO.md Dec 19, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO Markdown Text - 21.3 KB - MD5: 1e7c5b492edcbc27ce15f9432630984a All the codes used for simulating the genomes and so on
Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper Dec 19, 2022 - TrEMOLO software - Data and codes SABOT, Francois; MOHAMED, Mourdas, 2022, "Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper", https://doi.org/10.23708/N447VS, DataSuds, V1 This dataset contains the simulated reads used to validate TrEMOLO. The reads were created using DeeepSimulator v1.5 (https://github.com/liyu95/DeepSimulator/releases/tag/v1.5) using the options -B 2 -K n -l 20000.
TrEMOLO-2.2-beta.zip Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO ZIP Archive - 45.7 MB - MD5: fbd89eded443d033208d613612c46542
Simulated genome sequences for replication control for TrEMOLO Dec 16, 2022 - TrEMOLO software - Data and codes SABOT, Francois; MOHAMED, Mourdas, 2022, "Simulated genome sequences for replication control for TrEMOLO", https://doi.org/10.23708/DSDTZ0, DataSuds, V1 This dataset contains the simulated genomes based on the G0-F100 initial sequence including the INSIDERs and OUTSIDERs simulated insertions.
genomesData.tar.gz Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO Gzip Archive - 115.9 MB - MD5: 7a912bbb0b98eb838c66e7a081e44d0a Simulated genome sequences for replicating the TrEMOLO benchmarking assays
africanRice_nrctgs_V1.fasta Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Unknown - 504.0 MB - MD5: 9d5d44f42a84c20758347c6b96246c01 Data Fasta file of the new sequences absent from the reference
africanRice_nrctgs_V1_placedOnGenome.tab Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Tabular Data - 4.6 MB - 4 Variables, 152411 Observations - UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== Data CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

DIVAGRO_soil_measures.tab

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

Tabular Data - 1.4 KB - 1 Variables, 30 Observations -

Data

Soil measures for the two villages: NO3,NH4,N,C,C/N,P and pH

DIVAGRO_traits_perlandrace_perunit.tab

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

Tabular Data - 32.9 KB - 1 Variables, 225 Observations -

Data

14 traits measured for each landrace per repetition

v2.2-beta1 version used for the publication data of TrEMOLO

Dec 19, 2022 - TrEMOLO software - Data and codes

SABOT, Francois; MOHAMED, Mourdas, 2022, "v2.2-beta1 version used for the publication data of TrEMOLO", https://doi.org/10.23708/2FYBUL, DataSuds, V2

This dataset is the locked software version used for the publication of TrEMOLO. It represents the v2.2-beta1 version

README-TrEMOLO.md

Dec 19, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO

Markdown Text - 21.3 KB -

All the codes used for simulating the genomes and so on

Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper

Dec 19, 2022 - TrEMOLO software - Data and codes

SABOT, Francois; MOHAMED, Mourdas, 2022, "Replication data for simulated reads for S1, S2 and S3 genomes for the TrEMOLO paper", https://doi.org/10.23708/N447VS, DataSuds, V1

This dataset contains the simulated reads used to validate TrEMOLO. The reads were created using DeeepSimulator v1.5 (https://github.com/liyu95/DeepSimulator/releases/tag/v1.5) using the options -B 2 -K n -l 20000.

TrEMOLO-2.2-beta.zip

Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO

ZIP Archive - 45.7 MB -

Simulated genome sequences for replication control for TrEMOLO

Dec 16, 2022 - TrEMOLO software - Data and codes

SABOT, Francois; MOHAMED, Mourdas, 2022, "Simulated genome sequences for replication control for TrEMOLO", https://doi.org/10.23708/DSDTZ0, DataSuds, V1

This dataset contains the simulated genomes based on the G0-F100 initial sequence including the INSIDERs and OUTSIDERs simulated insertions.

genomesData.tar.gz

Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO

Gzip Archive - 115.9 MB -

Simulated genome sequences for replicating the TrEMOLO benchmarking assays

africanRice_nrctgs_V1.fasta

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Unknown - 504.0 MB -

Data

Fasta file of the new sequences absent from the reference

africanRice_nrctgs_V1_placedOnGenome.tab

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Tabular Data - 4.6 MB - 4 Variables, 152411 Observations -

Data

CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

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