UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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441 to 450 of 1,043 Results

TrEMOLO-2.2-beta.zip Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO ZIP Archive - 45.7 MB - MD5: fbd89eded443d033208d613612c46542
Simulated genome sequences for replication control for TrEMOLO Dec 16, 2022 - TrEMOLO software - Data and codes SABOT, Francois; MOHAMED, Mourdas, 2022, "Simulated genome sequences for replication control for TrEMOLO", https://doi.org/10.23708/DSDTZ0, DataSuds, V1 This dataset contains the simulated genomes based on the G0-F100 initial sequence including the INSIDERs and OUTSIDERs simulated insertions.
genomesData.tar.gz Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO Gzip Archive - 115.9 MB - MD5: 7a912bbb0b98eb838c66e7a081e44d0a Simulated genome sequences for replicating the TrEMOLO benchmarking assays
TrEMOLO software - Data and codes Dec 16, 2022 TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...
africanRice_nrctgs_V1.fasta Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Unknown - 504.0 MB - MD5: 9d5d44f42a84c20758347c6b96246c01 Data Fasta file of the new sequences absent from the reference
africanRice_nrctgs_V1_placedOnGenome.tab Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Tabular Data - 4.6 MB - 4 Variables, 152411 Observations - UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== Data CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.
Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Sep 22, 2022 - ADvENS Team Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF] This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l...
Data_Quercus_ilex_Tunisia_2020.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:6XhPE2A3ZC/WxUlI4UcuXg== DataDocumentation This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...
Quercus_ilex_Tunisia_Analyzed_data1.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.3 KB - 21 Variables, 24 Observations - UNF:6:/Diz8kQoyF9eN1vDG3xYQw== Data Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest
Quercus_ilex_Tunisia_Analyzed_data2.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 5.8 KB - 26 Variables, 24 Observations - UNF:6:GHF/3/NjGglg2I7s4uK4DA== Data Cross-correlation matrix between seed morphophysiological traits

TrEMOLO-2.2-beta.zip

Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO

ZIP Archive - 45.7 MB -

Simulated genome sequences for replication control for TrEMOLO

Dec 16, 2022 - TrEMOLO software - Data and codes

SABOT, Francois; MOHAMED, Mourdas, 2022, "Simulated genome sequences for replication control for TrEMOLO", https://doi.org/10.23708/DSDTZ0, DataSuds, V1

This dataset contains the simulated genomes based on the G0-F100 initial sequence including the INSIDERs and OUTSIDERs simulated insertions.

genomesData.tar.gz

Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO

Gzip Archive - 115.9 MB -

Simulated genome sequences for replicating the TrEMOLO benchmarking assays

TrEMOLO software - Data and codes

Dec 16, 2022

TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...

africanRice_nrctgs_V1.fasta

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Unknown - 504.0 MB -

Data

Fasta file of the new sequences absent from the reference

africanRice_nrctgs_V1_placedOnGenome.tab

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Tabular Data - 4.6 MB - 4 Variables, 152411 Observations -

Data

CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Sep 22, 2022 - ADvENS Team

Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF]

This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l...

Data_Quercus_ilex_Tunisia_2020.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

DataDocumentation

This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...

Quercus_ilex_Tunisia_Analyzed_data1.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.3 KB - 21 Variables, 24 Observations -

Data

Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest

Quercus_ilex_Tunisia_Analyzed_data2.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 5.8 KB - 26 Variables, 24 Observations -

Data

Cross-correlation matrix between seed morphophysiological traits

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