UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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441 to 450 of 1,032 Results

Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Sep 22, 2022 - ADvENS Team Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF] This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l...
Data_Quercus_ilex_Tunisia_2020.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:6XhPE2A3ZC/WxUlI4UcuXg== DataDocumentation This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...
Quercus_ilex_Tunisia_Analyzed_data1.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.3 KB - 21 Variables, 24 Observations - UNF:6:/Diz8kQoyF9eN1vDG3xYQw== Data Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest
Quercus_ilex_Tunisia_Analyzed_data2.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 5.8 KB - 26 Variables, 24 Observations - UNF:6:GHF/3/NjGglg2I7s4uK4DA== Data Cross-correlation matrix between seed morphophysiological traits
Quercus_ilex_Tunisia_Info_legend.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 4.1 KB - 4 Variables, 57 Observations - UNF:6:zDhm9+7gJOY1s3qihtdE4g== Documentation Description of the variables used
Quercus_ilex_Tunisia_Measured_data.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 8.7 KB - 57 Variables, 18 Observations - UNF:6:I8n0JHgQrbagPQ/J0DWPJw== DataGeospatial Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied
Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients Tabular Data - 38.4 KB - 8 Variables, 276 Observations - UNF:6:f5I6b7NXtJQ9UamqOw9VPQ== DataGeospatial Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia
Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes Aug 18, 2022 Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François; Cunnac, Sébastien, 2022, "Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/TBPNWJ, DataSuds, V3 CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/ Code development: h...
culebrONT-2.1.1.tar.gz Aug 18, 2022 - Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes Gzip Archive - 829.1 KB - MD5: c9d6c534f6cbdcb0de33a79b1a1a51c0 Code Source code of culebrONT pipeline stable version 2.1.1
Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes Aug 18, 2022 Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, Francois; Cunnac, Sébastien, 2022, "Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/RJDLCN, DataSuds, V1 Related to CulebrONT software, this dataset includes: - data used to test the software - 2 reports generated by the software : from the test data and from other data - supplementary technical information about CulebrONT pipeline

Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Sep 22, 2022 - ADvENS Team

Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF]

This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l...

Data_Quercus_ilex_Tunisia_2020.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

DataDocumentation

This Excel file "Data_Quercus_ilex_Tunisia_2020.xls" used in Amimi et al. includes: Sheet 1 (Info_legend): description of the variables used; sheet 2 (Quercus ilex coordinates): geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia;...

Quercus_ilex_Tunisia_Analyzed_data1.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.3 KB - 21 Variables, 24 Observations -

Data

Correlation matrix between seed morphophysiological traits and climatic variables at the site of harvest

Quercus_ilex_Tunisia_Analyzed_data2.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 5.8 KB - 26 Variables, 24 Observations -

Data

Cross-correlation matrix between seed morphophysiological traits

Quercus_ilex_Tunisia_Info_legend.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 4.1 KB - 4 Variables, 57 Observations -

Documentation

Description of the variables used

Quercus_ilex_Tunisia_Measured_data.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 8.7 KB - 57 Variables, 18 Observations -

DataGeospatial

Locations of the 18 source populations for Quercus ilex in Northern Tunisia, and their main associated climate characteristics, as well as variation in morphological and physiological traits of seeds and acorns among the 18 Tunisian Holm oak populations studied

Quercus_ilex_Tunisia_Quercus_ilex_coordinates.tab

Sep 22, 2022 - Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients

Tabular Data - 38.4 KB - 8 Variables, 276 Observations -

DataGeospatial

Geographical coordinates, elevation of Quercus ilex subsp. rotundifolia distribution sites in Tunisia

Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Aug 18, 2022

Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François; Cunnac, Sébastien, 2022, "Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/TBPNWJ, DataSuds, V3

CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/ Code development: h...

culebrONT-2.1.1.tar.gz

Aug 18, 2022 - Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Gzip Archive - 829.1 KB -

Code

Source code of culebrONT pipeline stable version 2.1.1

Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Aug 18, 2022

Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, Francois; Cunnac, Sébastien, 2022, "Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/RJDLCN, DataSuds, V1

Related to CulebrONT software, this dataset includes: - data used to test the software - 2 reports generated by the software : from the test data and from other data - supplementary technical information about CulebrONT pipeline

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