UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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511 to 520 of 1,109 Results

DIVAGRO_Grain_fodder_yield_perlandrace_perunit.tab Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation Tabular Data - 6.1 KB - 1 Variables, 120 Observations - UNF:6:kVJeBx2o7n2Ivo2oIfE5nw== Data Grain yield and fodder yield for each landrace per repetition
DIVAGRO_Readme_data.doc Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation MS Word - 41.0 KB - MD5: 8efb35ecca0388047b19c2aaebcec343 Documentation
DIVAGRO_soil_measures.tab Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation Tabular Data - 1.4 KB - 1 Variables, 30 Observations - UNF:6:934e90kSsr/w67IBQ4eeFg== Data Soil measures for the two villages: NO3,NH4,N,C,C/N,P and pH
DIVAGRO_traits_perlandrace_perunit.tab Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation Tabular Data - 32.9 KB - 1 Variables, 225 Observations - UNF:6:lGEnoGrgCkL1cTX9nVuCSA== Data 14 traits measured for each landrace per repetition
README-TrEMOLO.md Dec 19, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO Markdown Text - 21.3 KB - MD5: 1e7c5b492edcbc27ce15f9432630984a All the codes used for simulating the genomes and so on
TrEMOLO-2.2-beta.zip Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO ZIP Archive - 45.7 MB - MD5: fbd89eded443d033208d613612c46542
genomesData.tar.gz Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO Gzip Archive - 115.9 MB - MD5: 7a912bbb0b98eb838c66e7a081e44d0a Simulated genome sequences for replicating the TrEMOLO benchmarking assays
TrEMOLO software - Data and codes Dec 16, 2022 TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...
africanRice_nrctgs_V1.fasta Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Unknown - 504.0 MB - MD5: 9d5d44f42a84c20758347c6b96246c01 Data Fasta file of the new sequences absent from the reference
africanRice_nrctgs_V1_placedOnGenome.tab Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software Tabular Data - 4.6 MB - 4 Variables, 152411 Observations - UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== Data CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

DIVAGRO_Grain_fodder_yield_perlandrace_perunit.tab

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

Tabular Data - 6.1 KB - 1 Variables, 120 Observations -

Data

Grain yield and fodder yield for each landrace per repetition

DIVAGRO_Readme_data.doc

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

MS Word - 41.0 KB -

Documentation

DIVAGRO_soil_measures.tab

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

Tabular Data - 1.4 KB - 1 Variables, 30 Observations -

Data

Soil measures for the two villages: NO3,NH4,N,C,C/N,P and pH

DIVAGRO_traits_perlandrace_perunit.tab

Dec 19, 2022 - Data for: Varietal mixtures of Sahelian smallholders conciliate enhanced yield and agrobiodiversity conservation

Tabular Data - 32.9 KB - 1 Variables, 225 Observations -

Data

14 traits measured for each landrace per repetition

README-TrEMOLO.md

Dec 19, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO

Markdown Text - 21.3 KB -

All the codes used for simulating the genomes and so on

TrEMOLO-2.2-beta.zip

Dec 16, 2022 - v2.2-beta1 version used for the publication data of TrEMOLO

ZIP Archive - 45.7 MB -

genomesData.tar.gz

Dec 16, 2022 - Simulated genome sequences for replication control for TrEMOLO

Gzip Archive - 115.9 MB -

Simulated genome sequences for replicating the TrEMOLO benchmarking assays

TrEMOLO software - Data and codes

Dec 16, 2022

TrEMOLO is a bioinformatics tool dedicated to the detection of transposable elements movements using long reads. This dataverse contains all the data that we used for the TrEMOLO paper: the simulated dataset, the source code of TrEMOLO as well as all the accessory codes. "TrEMOLO...

africanRice_nrctgs_V1.fasta

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Unknown - 504.0 MB -

Data

Fasta file of the new sequences absent from the reference

africanRice_nrctgs_V1_placedOnGenome.tab

Oct 26, 2022 - Supporting data and code for the African Rice Panreference produced by the frangiPANe software

Tabular Data - 4.6 MB - 4 Variables, 152411 Observations -

Data

CSV file with the position of the new sequences on the genome reference. It contains one line per sequence, each containing 4 columns : (1) the sequence id, (2) its length (bp), (3) the chromosome name, (4) its position on the chromosome.

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