UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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51 to 60 of 1,207 Results

species_sources.tab Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food Tabular Data - 3.4 KB - 5 Variables, 17 Observations - UNF:6:stauDNtHYj79k+3CYoHcVg== Données List of sources were species were extracted
species_standardization.tab Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food Tabular Data - 511.5 KB - 5 Variables, 6305 Observations - UNF:6:x3kjwjFIUabA9HId9FzSNw== Données Link between standardized species names and sources
species.tab Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food Tabular Data - 225.0 KB - 8 Variables, 2449 Observations - UNF:6:q9+f7eoaYmsOK2h81InC3Q== Données standardized species list of crop species cultivated for human food
uses.tab Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food Tabular Data - 455.4 KB - 101 Variables, 2449 Observations - UNF:6:xsS1TknWs+l6IakIleKvug== Données Human uses of species
Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
get_seglen_frombam.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
gratools_core_dispensable_ratio_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 98.8 KB - MD5: c52a96e1a3a1c1fcfe49399c5030fc86 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_depth_nodes_stat_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 124.7 KB - MD5: 8a9f04f9ac34ae48143f1ec262218df2 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_rice_analysis_commands.md Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327 Documentation This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
gratools_stats_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 370.3 KB - MD5: e8eeed32f3adcea3d7e0cd1e6f805e96 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

species_sources.tab

Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food

Tabular Data - 3.4 KB - 5 Variables, 17 Observations -

Données

List of sources were species were extracted

species_standardization.tab

Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food

Tabular Data - 511.5 KB - 5 Variables, 6305 Observations -

Données

Link between standardized species names and sources

species.tab

Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food

Tabular Data - 225.0 KB - 8 Variables, 2449 Observations -

Données

standardized species list of crop species cultivated for human food

uses.tab

Jul 9, 2026 - SAGHAS - Sowing AGrobiodiversity to HArvest Sustainability: a multi-source database of crop species cultivated for human food

Tabular Data - 455.4 KB - 101 Variables, 2449 Observations -

Données

Human uses of species

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

get_seglen_frombam.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 3.3 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

gratools_core_dispensable_ratio_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 98.8 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_depth_nodes_stat_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 124.7 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_rice_analysis_commands.md

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Markdown Text - 33.9 KB -

Documentation

This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.

gratools_stats_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 370.3 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

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