DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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51 to 60 of 1,032 Results
data_v.1.1_C14-1.csv
May 6, 2025 - Radiocarbon data table for date palm remains for Date Back
Comma Separated Values - 17.6 KB - MD5: cfd3f1e78ece6f3c4982ecd814729c03
C14 table version 1.1 for DateBack
data_v.1.1_C14.csv
May 6, 2025 - Radiocarbon data table for date palm remains for Date Back
Comma Separated Values - 13.4 KB - MD5: 044e8f25588310d8adce27a19a95e2da
Radiocarbon table Version 1.1 (May 2025), following the revision of the manuscript. Two new fields were introduced, "Inclusion" and "Modification".
Appendix_1.csv
May 6, 2025 - Main data for DateBack
Comma Separated Values - 2.7 KB - MD5: a00f545558138de3e8d16f22bd65368f
Description of the data and metadata used in the dateback database
GrAnnoT source code and scripts
GrAnnoT source code and scripts
Mar 20, 2025 - GrAnnoT
Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2
GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main
ReadMe.txt
Mar 20, 2025 - GrAnnoT source code and scripts
Plain Text - 516 B - MD5: 25f858eade603eac11fdeab6de8f5863
Documentation
Data citation, description and terms of use
ReadMe.txt
Mar 20, 2025 - Output from the analysis described in GrAnnoT paper
Plain Text - 499 B - MD5: 683ef0fb3b9ffa3088f3c14f327409b3
Documentation
Data citation, description and terms of use
ReadMe.txt
Mar 20, 2025 - Data used for the analysis described in GrAnnoT paper
Plain Text - 488 B - MD5: e92eb31e2015df3e015c0b4f9fec78b2
Documentation
Data citation, description and terms of use
HumanChr1Graph_renamePaths.gfa
Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper
Unknown - 4.5 GB - MD5: 1db6205a09ea265f3385744974113906
Data
Human chromosome 1 pangenome graph made by the Human Pangenome Reference Consortium, and available at https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=pangenomes/scratch/2022_03_11_minigraph_cactus/.
RiceGraph_MGC.gfa
Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper
Unknown - 4.1 GB - MD5: 17cccb331973224bd4073066369cf1f2
Data
Asian rice pangenome graph built with the Nipponbare genome from the paper from 2020 by Zhou, Y., Chebotarov, D., Kudrna, D. et al., "A platinum standard pan-genome resource that represents the population structure of Asian rice" (doi:10.1038/s41597-020-0438-2), and 12 other gen...
RiceGraph_MGC_paths.gfa
Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper
Unknown - 4.3 GB - MD5: f541072bfc36b01c4bb1609192c272b9
Data
Pangenome graph adapted from the file "RiceGraph_MGC.gfa" by converting the walks into paths.
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