UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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61 to 70 of 1,207 Results

print_venn_gratools.R Mar 10, 2026 - Supporting data and scripts produced by the GraTools software R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
README Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Plain Text - 2.1 KB - MD5: 24b9cee6403fbab6f7d945cdee151346 Documentation contains information describing each script available in this repository
script_jap_ind.sh Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Shell Script - 1.0 KB - MD5: a52ca15e3c8d29b76e4828439be17001 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
supporting_data_README.txt Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Plain Text - 375 B - MD5: 0102ef91632371fc7f58d2a6ff2bcbd9 Documentation describes the contents of the repository
venn_gratools.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
Data used in the gratools paper Mar 6, 2026 - gratools Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1 These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.
ZenodoLinks.txt Mar 6, 2026 - Data used in the gratools paper Plain Text - 24 B - MD5: 1446b67cc3a41151413b63dc00dfccfa This is the Zenodo DOI for graphs from Bathycoccus, 20 arabidopsis and 69 arabidopsis
Code source for GraTools v1.1.0 Mar 6, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1 This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch
all_test.py Mar 6, 2026 - Code source for GraTools v1.1.0 Python Source Code - 24.0 KB - MD5: 8af67de733b151d422dc43fe10733f7a
bandage.png Mar 6, 2026 - Code source for GraTools v1.1.0 PNG Image - 234.9 KB - MD5: 557b98abd151a28727d18b99187cd9f4

print_venn_gratools.R

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

R Syntax - 947 B -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

README

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Plain Text - 2.1 KB -

Documentation

contains information describing each script available in this repository

script_jap_ind.sh

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Shell Script - 1.0 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

supporting_data_README.txt

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Plain Text - 375 B -

Documentation

describes the contents of the repository

venn_gratools.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 2.8 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

Data used in the gratools paper

Mar 6, 2026 - gratools

Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1

These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.

ZenodoLinks.txt

Mar 6, 2026 - Data used in the gratools paper

Plain Text - 24 B -

This is the Zenodo DOI for graphs from Bathycoccus, 20 arabidopsis and 69 arabidopsis

Code source for GraTools v1.1.0

Mar 6, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1

This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch

all_test.py

Mar 6, 2026 - Code source for GraTools v1.1.0

Python Source Code - 24.0 KB -

bandage.png

Mar 6, 2026 - Code source for GraTools v1.1.0

PNG Image - 234.9 KB -

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