UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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71 to 80 of 1,043 Results

refpath_odgi Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 663 B - MD5: 52f6a241090f7c84ec4bb2647a25c280 Text file necessary to run ODGI on the rice data.
refpath_vg Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 687 B - MD5: f46438fd1982895d067497b239b317c5 Data Text file necessary to run VG on the rice data.
nb_allFeatures.fa Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 626.5 MB - MD5: 25854fb0391bc1676dcddc967fdf3371 Data Fasta file of all the features from the annotation file "nb_allFeatures.gff3".
nb_allFeatures.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 77.7 MB - MD5: 4a8e0be436e73bdf85baa362947c6dba Data Annotation file of the genome Nipponbare from the Rice Genome Annotation Project, available at https://rice.uga.edu/.
nb_allFeatures_renamed_filter.bed Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper PLINK Binary - 92.5 MB - MD5: 09bb2ab302dd81c51549bff1a2e4116e Data Bed file with all the features from the annotation file "nb_allFeatures.gff3".
nb_allFeatures_renamepath_annotate.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 92.5 MB - MD5: f9a87d3c48157c180a641b65d0d89412 Data Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.
liftoff_transfer_chm13_to_grch38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 160.9 MB - MD5: a944747959786332e338b42bce913de8 Data Result of the human Chr1 annotation transfer by Liftoff
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
GRCh38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 96.1 MB - MD5: 0f9debe9433625ca59709513e6d9edaf Data Result of the human Chr1 annotation transfer by GrAnnoT
reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 229.8 MB - MD5: 40ebe8ac4299a91fbcc080e0a35e725e Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

refpath_odgi

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 663 B -

Text file necessary to run ODGI on the rice data.

refpath_vg

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 687 B -

Data

Text file necessary to run VG on the rice data.

nb_allFeatures.fa

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 626.5 MB -

Data

Fasta file of all the features from the annotation file "nb_allFeatures.gff3".

nb_allFeatures.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 77.7 MB -

Data

Annotation file of the genome Nipponbare from the Rice Genome Annotation Project, available at https://rice.uga.edu/.

nb_allFeatures_renamed_filter.bed

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

PLINK Binary - 92.5 MB -

Data

Bed file with all the features from the annotation file "nb_allFeatures.gff3".

nb_allFeatures_renamepath_annotate.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 92.5 MB -

Data

Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.

liftoff_transfer_chm13_to_grch38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 160.9 MB -

Data

Result of the human Chr1 annotation transfer by Liftoff

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

GRCh38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 96.1 MB -

Data

Result of the human Chr1 annotation transfer by GrAnnoT

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 229.8 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

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