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Subject: Agricultural Sciences

1 to 10 of 122 Results

Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
Data used in the gratools paper Mar 6, 2026 - gratools Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1 These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.
Code source for GraTools v1.1.0 Mar 6, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1 This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch
Integrative omics approaches reveal mechanisms of combined heat stress and extreme hypoxia tolerance in a Cerambycid beetle larva Mar 2, 2026 - UMR CBGP Javal, Marion; Lehmann, Philipp; Bierman, Anandi; Kostal, Vladimir; Moos, Martin; Chantelle Smit; Vogel, Heiko; Conlong, Desmond; Terblanche, John, 2026, "Integrative omics approaches reveal mechanisms of combined heat stress and extreme hypoxia tolerance in a Cerambycid beetle larva", https://doi.org/10.23708/6F3OA0, DataSuds, V1, UNF:6:6hHn0cnpqoty8431L6/RCg== [fileUNF] Atmospheric oxygen, which is essential for energy metabolism, can directly influence an animal’s heat tolerance by affecting oxygen transport processes, especially in those living in oxygen-poor environments, such as inside plant tissues, underground or in aquatic environments. Y...
Phenotyping data for rice lines edited in the resistance gene against rice yellow mottle disease, rymv1, obtained from the Kitaake variety Feb 6, 2026 - UMR PHIM Albar, Laurence; Chéron, Sophie; Dossou, Laurence; Pinel-Galzi, Agnès; Thomas, Emilie; Aribi, Jamel, 2026, "Phenotyping data for rice lines edited in the resistance gene against rice yellow mottle disease, rymv1, obtained from the Kitaake variety", https://doi.org/10.23708/ZWRXNJ, DataSuds, V2, UNF:6:ZAwu0yUhHw5wFEXYULYagQ== [fileUNF] The rice yellow mottle virus (RYMV, Sobemovirus RYMV) is one of the most devastating viral pathogens affecting rice production in Africa.The recessive resistance gene rymv1 encodes the eukaryotic translation initiation factor 4G isoform eIFiso4G1, which acts as a susceptibility f...
Territorial nitrogen budget and metabolic typologies of European agri-food systems, 1990-2019 Jan 5, 2026 - UMR iEES-Paris Harter, Ludovic; Einarsson, Rasmus; Lata, Jean-Christophe; Le Noë, Julia, 2025, "Territorial nitrogen budget and metabolic typologies of European agri-food systems, 1990-2019", https://doi.org/10.23708/4FAPMG, DataSuds, V2, UNF:6:uAI7559V5hhYMgQxUvWMGg== [fileUNF] This dataset was developed to implement the GRAFS (Generalized Representation of Agri-Food Systems) approach and provides harmonized nitrogen (N) flows and budgets across agri-food systems for 120 territories across Europe, mainly at the subnational level, covering the period 199...
Lamto GIS layer (raster dataset): oblique aerial photographs of the Lamto reserve (Côte d'Ivoire) acquired by L.Gautier on April 4, 1988. Nov 12, 2025 - Savane de Lamto - LMI Ecologie et Développement Durable Zaiss, R.; Gignoux, J.; Barot, S.; Konaté, S.; Gautier, L., 2022, "Lamto GIS layer (raster dataset): oblique aerial photographs of the Lamto reserve (Côte d'Ivoire) acquired by L.Gautier on April 4, 1988.", https://doi.org/10.23708/4DZ0CG, DataSuds, V3 This dataset holds the process chain to produce a orthomosaic from oblique aerial photographs acquired by Gautier using a cessna airplane and a handheld 35 mm camera on April 11, 1988 . We digitized the original colour diapos and created a orthomosaic using ground control points...
Data used for the analysis described in GrAnnoT paper Oct 29, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
Output from the analysis described in GrAnnoT paper Oct 29, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V6 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.
Données d'enquêtes de caractérisation des systèmes de cultures maraichères du projet MARIGO WP3 "Santé des sols" Oct 16, 2025 - UMR Eco&Sols Dieket, Audrey Dominique; Gueï, Jecolia Hyrsène; Masse, Dominique; Zon, Demeango Serge; Nandjui, Jacob; Tondoh, Ebagnerin Jerome, 2025, "Données d'enquêtes de caractérisation des systèmes de cultures maraichères du projet MARIGO WP3 "Santé des sols"", https://doi.org/10.23708/8O7DFA, DataSuds, V2, UNF:6:lnfLhn/ykeyhnfVvl7LGFA== [fileUNF] Ce tableau réunit l'ensemble des données d'enquêtes réalisées dans le cadre du projet MARIGO (https://www.projet-marigo.org/) et du WP3 "Santé des sols" (https://www.projet-marigo.org/les-activites/sante-des-sols) Ces enquêtes ont été menées par Audrey Dominique Dieket et Hyrsène...

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

Data used in the gratools paper

Mar 6, 2026 - gratools

Sabot, Francois, 2026, "Data used in the gratools paper", https://doi.org/10.23708/SOTLQU, DataSuds, V1

These are the data (mostly Pangenome variation graphs) that were used in the gratools paper only. The file is the Zenodo DOI link for the thre graphs.

Code source for GraTools v1.1.0

Mar 6, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1

This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch

Integrative omics approaches reveal mechanisms of combined heat stress and extreme hypoxia tolerance in a Cerambycid beetle larva

Mar 2, 2026 - UMR CBGP

Javal, Marion; Lehmann, Philipp; Bierman, Anandi; Kostal, Vladimir; Moos, Martin; Chantelle Smit; Vogel, Heiko; Conlong, Desmond; Terblanche, John, 2026, "Integrative omics approaches reveal mechanisms of combined heat stress and extreme hypoxia tolerance in a Cerambycid beetle larva", https://doi.org/10.23708/6F3OA0, DataSuds, V1, UNF:6:6hHn0cnpqoty8431L6/RCg== [fileUNF]

Atmospheric oxygen, which is essential for energy metabolism, can directly influence an animal’s heat tolerance by affecting oxygen transport processes, especially in those living in oxygen-poor environments, such as inside plant tissues, underground or in aquatic environments. Y...

Phenotyping data for rice lines edited in the resistance gene against rice yellow mottle disease, rymv1, obtained from the Kitaake variety

Feb 6, 2026 - UMR PHIM

Albar, Laurence; Chéron, Sophie; Dossou, Laurence; Pinel-Galzi, Agnès; Thomas, Emilie; Aribi, Jamel, 2026, "Phenotyping data for rice lines edited in the resistance gene against rice yellow mottle disease, rymv1, obtained from the Kitaake variety", https://doi.org/10.23708/ZWRXNJ, DataSuds, V2, UNF:6:ZAwu0yUhHw5wFEXYULYagQ== [fileUNF]

The rice yellow mottle virus (RYMV, Sobemovirus RYMV) is one of the most devastating viral pathogens affecting rice production in Africa.The recessive resistance gene rymv1 encodes the eukaryotic translation initiation factor 4G isoform eIFiso4G1, which acts as a susceptibility f...

Territorial nitrogen budget and metabolic typologies of European agri-food systems, 1990-2019

Jan 5, 2026 - UMR iEES-Paris

Harter, Ludovic; Einarsson, Rasmus; Lata, Jean-Christophe; Le Noë, Julia, 2025, "Territorial nitrogen budget and metabolic typologies of European agri-food systems, 1990-2019", https://doi.org/10.23708/4FAPMG, DataSuds, V2, UNF:6:uAI7559V5hhYMgQxUvWMGg== [fileUNF]

This dataset was developed to implement the GRAFS (Generalized Representation of Agri-Food Systems) approach and provides harmonized nitrogen (N) flows and budgets across agri-food systems for 120 territories across Europe, mainly at the subnational level, covering the period 199...

Lamto GIS layer (raster dataset): oblique aerial photographs of the Lamto reserve (Côte d'Ivoire) acquired by L.Gautier on April 4, 1988.

Nov 12, 2025 - Savane de Lamto - LMI Ecologie et Développement Durable

Zaiss, R.; Gignoux, J.; Barot, S.; Konaté, S.; Gautier, L., 2022, "Lamto GIS layer (raster dataset): oblique aerial photographs of the Lamto reserve (Côte d'Ivoire) acquired by L.Gautier on April 4, 1988.", https://doi.org/10.23708/4DZ0CG, DataSuds, V3

This dataset holds the process chain to produce a orthomosaic from oblique aerial photographs acquired by Gautier using a cessna airplane and a handheld 35 mm camera on April 11, 1988 . We digitized the original colour diapos and created a orthomosaic using ground control points...

Data used for the analysis described in GrAnnoT paper

Oct 29, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

Output from the analysis described in GrAnnoT paper

Oct 29, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V6

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.

Données d'enquêtes de caractérisation des systèmes de cultures maraichères du projet MARIGO WP3 "Santé des sols"

Oct 16, 2025 - UMR Eco&Sols

Dieket, Audrey Dominique; Gueï, Jecolia Hyrsène; Masse, Dominique; Zon, Demeango Serge; Nandjui, Jacob; Tondoh, Ebagnerin Jerome, 2025, "Données d'enquêtes de caractérisation des systèmes de cultures maraichères du projet MARIGO WP3 "Santé des sols"", https://doi.org/10.23708/8O7DFA, DataSuds, V2, UNF:6:lnfLhn/ykeyhnfVvl7LGFA== [fileUNF]

Ce tableau réunit l'ensemble des données d'enquêtes réalisées dans le cadre du projet MARIGO (https://www.projet-marigo.org/) et du WP3 "Santé des sols" (https://www.projet-marigo.org/les-activites/sante-des-sols) Ces enquêtes ont été menées par Audrey Dominique Dieket et Hyrsène...

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