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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

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          → Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection.    → Mode d'emploi
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181 to 190 of 9,410 Results
SDNR_timeseries_standardized.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 149.8 KB - 29 Variables, 894 Observations - UNF:6:UICCsS21y13bmjNxJ2tyqA==
Données
- Harmonized biweekly time series (2015-2025) - 894 observations, 4 stations (HA, PC, BD, BK) - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~147 KB
SDNR_transects_QC.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 29.6 KB - 45 Variables, 162 Observations - UNF:6:aHx3OEqwNpLIg2Hn8NRtYg==
Données
- Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - **PRIMARY DATA FILE FOR USERS** - File size: ~30 KB
SDNR_transects_standardized.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 23.8 KB - 26 Variables, 162 Observations - UNF:6:ii2FAPWT4tpdMZPifowkaA==
Données
- Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB
_shared.py
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Python Source Code - 7.0 KB - MD5: 04013112f3454eff2ad5716365719c83
Code
station_metadata.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 354 B - 3 Variables, 4 Observations - UNF:6:rd+suLd8zavZVSIsvgXulQ==
Documentation
- Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Mar 4, 2026 - UMR MIVEGEC
Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V1, UNF:6:v6tEqVWAwrDj6vZeLCHY6A== [fileUNF]
This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...
probe_panel.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 2.0 MB - MD5: 79cd3dfa2761d332bb245d80c80d797c
Données
Virals sequences used for probes design
ReadMe.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 2.9 KB - MD5: 1da614b01e6d144d9b8e429371ed6c4f
Documentation
contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
ReadMe_10-23708_LTXIKA.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 1.6 KB - MD5: ea8e34379c7dd2e422ee8c7cc3da5a9b
Documentation
contains the citation, description and conditions of use, or even access, depending on the case, to the dataset
CAMISIM_script.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 4.3 KB - MD5: 7d1270ccb9f41129020b74093984e1ba
Code
Script to generate simulated paired-end metagenomic samples
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