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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

 Comment publier un jeu de données (dataset) dans DataSuds ?
          → Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection.    → Mode d'emploi
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201 to 210 of 9,410 Results
Taxprofiler.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 532 B - MD5: 0b1dba73a89694a8786f937eeffec0e4
Code
Taxprofiler command script.
taxprofiler_db.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 186 B - 4 Variables, 1 Observations - UNF:6:owXJ1TE2Pl/ttHdbzldF6g==
Données
taxprofiler database input file, companion file of Taxprofiler.sh.
taxprofiler_input.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 828 B - 6 Variables, 5 Observations - UNF:6:K/XMHKnbfbWmNFfjnqG7CA==
Données
taxprofiler samples input file, companion file of Taxprofiler.sh.
taxprof_ressouces.config
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 103 B - MD5: 653be8d086a3fe012cc314f1778222d6
Code
Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.
Viroseek.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 537 B - MD5: 5f26695e80c215ec06a2d729eb968035
Code
ViroSeek command script, used in this study.
ViroSeek_input.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 733 B - 3 Variables, 5 Observations - UNF:6:tyuLW2kmYZtk+8pIMV/RPQ==
Données
ViroSeek samples input file, companion file of Viroseek.sh.
Virustaxo.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 796 B - MD5: 0795e28824f2eea8ac17a2831eff3fa2
Code
Virustaxo command script.
asv1.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056
Données
Fasta file required for ViroSeek_downstream_analysis.rmd
compile2.py
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: 5b7a5150bc4f3414b6258c75ab30f952
Code
Script for summarising for each taxonomic assignment
metadataencours.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 330 B - 6 Variables, 6 Observations - UNF:6:G/lBLbWcA/mrI8LJUMN5ww==
Données
Excel for ViroSeek_downstream_analysis.rmd
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