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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

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391 to 400 of 9,739 Results
SDNR_transects_QC.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 29.6 KB - 45 Variables, 162 Observations - UNF:6:aHx3OEqwNpLIg2Hn8NRtYg==
Données
- Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - **PRIMARY DATA FILE FOR USERS** - File size: ~30 KB
SDNR_transects_standardized.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 23.8 KB - 26 Variables, 162 Observations - UNF:6:ii2FAPWT4tpdMZPifowkaA==
Données
- Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB
_shared.py
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Python Source Code - 7.0 KB - MD5: 04013112f3454eff2ad5716365719c83
Code
station_metadata.tab
Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam
Tabular Data - 354 B - 3 Variables, 4 Observations - UNF:6:rd+suLd8zavZVSIsvgXulQ==
Documentation
- Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Mar 4, 2026 - UMR MIVEGEC
Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V1, UNF:6:v6tEqVWAwrDj6vZeLCHY6A== [fileUNF]
This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...
asv1.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056
Données
Fasta file required for ViroSeek_downstream_analysis.rmd
bash.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 2.4 KB - MD5: 000890f8685ca18eac744416df40240e
Code
Modules for ViroSeek
bbmap.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 693 B - MD5: e8fa0db631cf655672f252ca01ef8789
Code
Modules for ViroSeek
bioawk.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 655 B - MD5: 76915c2d9c8fc0265abb386b301e7c73
Code
Modules for ViroSeek
CAMISIM_script.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 4.3 KB - MD5: 7d1270ccb9f41129020b74093984e1ba
Code
Script to generate simulated paired-end metagenomic samples
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