DataSuds

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L’entrepôt de données DataSuds propose aux scientifiques de l’IRD et à leurs partenaires un service pour préserver, diffuser et valoriser leurs données de recherche en facilitant leur identification, leur référencement et leur citation. En tant que plateforme de publication de données, il constitue l'un des éléments du dispositif de la Science Ouverte pour le Sud que promeut l’IRD.

Comment publier un jeu de données (dataset) dans DataSuds ?
→ Support utilisateurs : demander l'accès à une collection existante (laboratoire, équipe, projet) ou la création d'une nouvelle collection. → Mode d'emploi

UMI TransVIHMI

UMR CEREGE

UMR ESPACE-DEV

UMR PHIM

UMR DIADE

Base cartographique Sphaera

Partnerships

UMR iEES-Paris

UMR AMAP

UMR HydroSciences Montpellier

UMR Entropie

UMR MIO

UMR MoISA

UMR MIVEGEC

UMR GET

UMI SOURCE

UMR EGCE

UMR Eco&Sols

UMR INTERTRYP

UMR QualiSud

UMR LEMAR

UMR LEDa

UMR PHARMADEV

UMR CBGP

UMR PALOC

UMR MERIT

UMI UMMISCO

UMR SENS

UMR Ceped

UMR IGE

UMR LMV

UMR MARBEC

UMR G-EAU

UMR Geoazur

LMI CARIBACT

Mission pour la Science Ouverte (MSO)

LMI PathoBios

Data collected as part of M-TROPICS based research projects

Rain Cell projects

AMMA-CATCH associated projects

Paddle project

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4,151 to 4,160 of 9,038 Results

PHIM_ xisRNA_session.RData Sep 30, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" R Data - 849.4 MB - MD5: d52bc72c86361b747f98eb875e13a00d Data R statistical programming language RData file storing the objects created for the production of the "PHIM_ xisRNA_MS_dataverse_code.html" file using the R code found in the html file itself as well as in the "PHIM_ xisRNA_MS_dataverse_code.Rmd" R Markdown file.
Data from: Detecting the effects of rapid tectonically-induced subsidence on Mayotte Island since 2018 on beach and reef morphology, and implications for coastal vulnerability to marine flooding Sep 11, 2021 - UMR ESPACE-DEV Jeanson, M; Anthony, EJ; Charroux, S; Aubry, A; Dolique, F, 2021, "Data from: Detecting the effects of rapid tectonically-induced subsidence on Mayotte Island since 2018 on beach and reef morphology, and implications for coastal vulnerability to marine flooding", https://doi.org/10.5281/zenodo.5501313, Zenodo This dataset contains data from the monitoring morphological evolution of beaches and coral reefs in Mayotte island. Mayotte, part of the coral reef-fringed Comoro archipelago in the SW Indian Ocean, experienced in 2018 and 2019 an intense seismic crisis. The repeated earthquake... This dataset is harvested from DataSuds-geo repository. / Ce jeu de données est moissonné à partir de l'entrepôt DataSuds-geo.
Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016 Sep 10, 2021 - Microplastic in Aquatic Environments Kieu-Le, Thuy-Chung; Tran, Quoc-Viet; Truong, Tran Nguyen Sang; Strady, Emilie, 2021, "Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016", https://doi.org/10.23708/8PJIOR, DataSuds, V1, UNF:6:P5tqYhusE6BFljKW4Usm8g== [fileUNF] Anthropogenic fibers concentrations were measured in clams sampled in the beach sediment of Can Gio mangrove, Ho Chi Minh City, Viet Nam, from March 2016 to October 2016 (except September 2016). Details of the size and colour of anthropogenic fibers observed in each pooled clam a...
Anthropogenic_fibers_in_clams_ number_size_colour.tab Sep 10, 2021 - Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016 Tabular Data - 42.3 KB - 29 Variables, 434 Observations - UNF:6:RrihjsHtZvPcS5vxn5fRgQ== Data Size and colour of anthropogenic fibers observed in each pooled clam and in specific dissected part of the clam are given.
Clam_dissection_data_dictionary.txt Sep 10, 2021 - Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016 Plain Text - 772 B - MD5: 0afa383dc59a4e9fb6059fbba9b8a285 Documentation Data dictionary
Clams_information_data_dictionary.txt Sep 10, 2021 - Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016 Plain Text - 781 B - MD5: 9292e760b3c670a045a8f52676a1aefc Documentation Data dictionary
Clams_information.tab Sep 10, 2021 - Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016 Tabular Data - 11.7 KB - 8 Variables, 112 Observations - UNF:6:yAB4vK7/mYnTjBHF3l0IOQ== Data Sampled clams details (length, mass)
User centric metadata model Sep 7, 2021 - UCMM BERETTA, Valentina, 2019, "User centric metadata model", https://doi.org/10.23708/KMJ4CC, DataSuds, V5 The user centric metadata model aims to foster multi-disciplinary research, describing dataset of different disciplines in the same manner. It is able to favour the user viewpoint using the observation paradigm, adopted by the Observation&Measurement data model, for specifying th...
ucmm_dataset.owl Sep 7, 2021 - User centric metadata model Unknown - 27.6 KB - MD5: 96990104236f4d93c02a54c6597fc49c this file contains a fixed version of the UCMM ontology. it is associated with a example dataset
1_TtmappednewTtvar_biallelic.vcf.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 704.4 MB - MD5: 4461877afe51bc505f570808593aa7c0 Data Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.

PHIM_ xisRNA_session.RData

Sep 30, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

R Data - 849.4 MB -

Data

R statistical programming language RData file storing the objects created for the production of the "PHIM_ xisRNA_MS_dataverse_code.html" file using the R code found in the html file itself as well as in the "PHIM_ xisRNA_MS_dataverse_code.Rmd" R Markdown file.

Data from: Detecting the effects of rapid tectonically-induced subsidence on Mayotte Island since 2018 on beach and reef morphology, and implications for coastal vulnerability to marine flooding

Sep 11, 2021 - UMR ESPACE-DEV

Jeanson, M; Anthony, EJ; Charroux, S; Aubry, A; Dolique, F, 2021, "Data from: Detecting the effects of rapid tectonically-induced subsidence on Mayotte Island since 2018 on beach and reef morphology, and implications for coastal vulnerability to marine flooding", https://doi.org/10.5281/zenodo.5501313, Zenodo

This dataset contains data from the monitoring morphological evolution of beaches and coral reefs in Mayotte island. Mayotte, part of the coral reef-fringed Comoro archipelago in the SW Indian Ocean, experienced in 2018 and 2019 an intense seismic crisis. The repeated earthquake...

This dataset is harvested from DataSuds-geo repository. / Ce jeu de données est moissonné à partir de l'entrepôt DataSuds-geo.

Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016

Sep 10, 2021 - Microplastic in Aquatic Environments

Kieu-Le, Thuy-Chung; Tran, Quoc-Viet; Truong, Tran Nguyen Sang; Strady, Emilie, 2021, "Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016", https://doi.org/10.23708/8PJIOR, DataSuds, V1, UNF:6:P5tqYhusE6BFljKW4Usm8g== [fileUNF]

Anthropogenic fibers concentrations were measured in clams sampled in the beach sediment of Can Gio mangrove, Ho Chi Minh City, Viet Nam, from March 2016 to October 2016 (except September 2016). Details of the size and colour of anthropogenic fibers observed in each pooled clam a...

Anthropogenic_fibers_in_clams_ number_size_colour.tab

Sep 10, 2021 - Anthropogenic fibers (quantity, size, colour) observed in whole body, gills, digestive glands and remaining tissues of Asiatic Clam (Meretrix Lyrata) sampled in Can Gio mangrove, Ho Chi Minh City, Viet Nam in 2016

Tabular Data - 42.3 KB - 29 Variables, 434 Observations -

Data

Size and colour of anthropogenic fibers observed in each pooled clam and in specific dissected part of the clam are given.

Clam_dissection_data_dictionary.txt

Plain Text - 772 B -

Documentation

Data dictionary

Clams_information_data_dictionary.txt

Plain Text - 781 B -

Documentation

Data dictionary

Clams_information.tab

Tabular Data - 11.7 KB - 8 Variables, 112 Observations -

Data

Sampled clams details (length, mass)

User centric metadata model

Sep 7, 2021 - UCMM

BERETTA, Valentina, 2019, "User centric metadata model", https://doi.org/10.23708/KMJ4CC, DataSuds, V5

The user centric metadata model aims to foster multi-disciplinary research, describing dataset of different disciplines in the same manner. It is able to favour the user viewpoint using the observation paradigm, adopted by the Observation&Measurement data model, for specifying th...

ucmm_dataset.owl

Sep 7, 2021 - User centric metadata model

Unknown - 27.6 KB -

this file contains a fixed version of the UCMM ontology. it is associated with a example dataset

1_TtmappednewTtvar_biallelic.vcf.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 704.4 MB -

Data

Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.

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